miRNA display CGI


Results 61 - 80 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23117 3' -55.6 NC_005178.1 + 24592 0.69 0.409591
Target:  5'- uGGCCU-GGAacUGgGucACCAGGCCGg -3'
miRNA:   3'- -CCGGGuCCUguACgUuuUGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 25397 0.67 0.501121
Target:  5'- uGCuCCAGGACGUcGCGguAGGCgCGGGUCu -3'
miRNA:   3'- cCG-GGUCCUGUA-CGU--UUUG-GUCCGGc -5'
23117 3' -55.6 NC_005178.1 + 25434 0.66 0.555699
Target:  5'- cGGCgCAGGcgGCGcGCccaucGGCCAGGCCc -3'
miRNA:   3'- -CCGgGUCC--UGUaCGuu---UUGGUCCGGc -5'
23117 3' -55.6 NC_005178.1 + 25514 0.67 0.501121
Target:  5'- aGGgCCAGGGCcaaGCcGAggcGCCAGGUCa -3'
miRNA:   3'- -CCgGGUCCUGua-CGuUU---UGGUCCGGc -5'
23117 3' -55.6 NC_005178.1 + 25564 0.67 0.479945
Target:  5'- aGCCCGGuaccaGCccGCAccaGGGCUAGGCCGg -3'
miRNA:   3'- cCGGGUCc----UGuaCGU---UUUGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 25847 0.69 0.409591
Target:  5'- uGGCCguGGccgGCAUuucgGCAGGucaguaccGCCAGGCCa -3'
miRNA:   3'- -CCGGguCC---UGUA----CGUUU--------UGGUCCGGc -5'
23117 3' -55.6 NC_005178.1 + 26280 0.68 0.44802
Target:  5'- aGCUCGGGGCgguuggaGUGCAgguAAACCaccaggauuGGGCCGa -3'
miRNA:   3'- cCGGGUCCUG-------UACGU---UUUGG---------UCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 26401 0.75 0.164038
Target:  5'- aGCCCAGGGCG-GCG--GCCAGGgCGc -3'
miRNA:   3'- cCGGGUCCUGUaCGUuuUGGUCCgGC- -5'
23117 3' -55.6 NC_005178.1 + 26470 0.76 0.14237
Target:  5'- cGGCCgAGGugGaUGCGGGAUCAGGCa- -3'
miRNA:   3'- -CCGGgUCCugU-ACGUUUUGGUCCGgc -5'
23117 3' -55.6 NC_005178.1 + 26728 0.7 0.346021
Target:  5'- cGCCUGGGACGaaaUGCucGGCgUGGGCCGg -3'
miRNA:   3'- cCGGGUCCUGU---ACGuuUUG-GUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 27243 0.67 0.509706
Target:  5'- cGGCCCucggcuauccgccAGGACGUGCcgccGAGcugcucgacuaccACCAgcguGGCCGg -3'
miRNA:   3'- -CCGGG-------------UCCUGUACG----UUU-------------UGGU----CCGGC- -5'
23117 3' -55.6 NC_005178.1 + 27457 0.66 0.58928
Target:  5'- cGCUCGaccuGGaACAUGC---GCCGGGCCa -3'
miRNA:   3'- cCGGGU----CC-UGUACGuuuUGGUCCGGc -5'
23117 3' -55.6 NC_005178.1 + 27458 0.67 0.479945
Target:  5'- cGGCCCAGcGCAUcaGCcuGGACCAGaagaucGCCGa -3'
miRNA:   3'- -CCGGGUCcUGUA--CGu-UUUGGUC------CGGC- -5'
23117 3' -55.6 NC_005178.1 + 27882 0.66 0.58928
Target:  5'- cGCCCAGGGCAacUGgGucAACgGGGCg- -3'
miRNA:   3'- cCGGGUCCUGU--ACgUu-UUGgUCCGgc -5'
23117 3' -55.6 NC_005178.1 + 27884 0.67 0.533621
Target:  5'- cGCCUcGGcCGgcucgGCGAAGCCAccGGCCGc -3'
miRNA:   3'- cCGGGuCCuGUa----CGUUUUGGU--CCGGC- -5'
23117 3' -55.6 NC_005178.1 + 28630 0.66 0.544624
Target:  5'- -cCCCAGcGCAcG-GAAGCCGGGCCGa -3'
miRNA:   3'- ccGGGUCcUGUaCgUUUUGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 28661 0.69 0.390696
Target:  5'- uGGCCCAGGGucUGgAuguACCGGGCg- -3'
miRNA:   3'- -CCGGGUCCUguACgUuu-UGGUCCGgc -5'
23117 3' -55.6 NC_005178.1 + 28923 0.66 0.555699
Target:  5'- aGCCgaaCGGGAuCGUGCGu-ACCuuGGCCGg -3'
miRNA:   3'- cCGG---GUCCU-GUACGUuuUGGu-CCGGC- -5'
23117 3' -55.6 NC_005178.1 + 29771 0.66 0.588153
Target:  5'- uGGCCuauuucaCAGGaACA-GCGAacAACCcGGCCGa -3'
miRNA:   3'- -CCGG-------GUCC-UGUaCGUU--UUGGuCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 30488 0.69 0.390696
Target:  5'- cGCCCAGGGCcgggcacucaAUGCGGcucagcgcGGCCAGGacaCGa -3'
miRNA:   3'- cCGGGUCCUG----------UACGUU--------UUGGUCCg--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.