miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23117 5' -56.6 NC_005178.1 + 13849 0.66 0.542532
Target:  5'- cGUCGCcCUGCgCCaccggcuugccggcaUGGGUGUGAUUGGg -3'
miRNA:   3'- -CAGCGcGGCGaGG---------------ACCUACACUAGUC- -5'
23117 5' -56.6 NC_005178.1 + 32066 0.66 0.538152
Target:  5'- --gGCGaCCGCg-CUGGAUGUGcgCAa -3'
miRNA:   3'- cagCGC-GGCGagGACCUACACuaGUc -5'
23117 5' -56.6 NC_005178.1 + 11754 0.66 0.538152
Target:  5'- gGUCcCGuuGCUCCUGGAgcuuggcguUGUaGGUCGu -3'
miRNA:   3'- -CAGcGCggCGAGGACCU---------ACA-CUAGUc -5'
23117 5' -56.6 NC_005178.1 + 26458 0.66 0.527257
Target:  5'- -gCGCGgCGCUgCCggccgaggUGGAUGcggGAUCAGg -3'
miRNA:   3'- caGCGCgGCGA-GG--------ACCUACa--CUAGUC- -5'
23117 5' -56.6 NC_005178.1 + 31064 0.66 0.484578
Target:  5'- cGUCGcCGCCGCUggguuuugcugcCCUGGAggaacgcaccUGgacGGUCAGc -3'
miRNA:   3'- -CAGC-GCGGCGA------------GGACCU----------ACa--CUAGUC- -5'
23117 5' -56.6 NC_005178.1 + 23163 0.66 0.484578
Target:  5'- uGUCGCGCUGCUCCgGGcUGcgGAc--- -3'
miRNA:   3'- -CAGCGCGGCGAGGaCCuACa-CUaguc -5'
23117 5' -56.6 NC_005178.1 + 1922 0.68 0.414217
Target:  5'- cGUCGUGCCGCUguagaCCUGGAgc--GUCAc -3'
miRNA:   3'- -CAGCGCGGCGA-----GGACCUacacUAGUc -5'
23117 5' -56.6 NC_005178.1 + 24480 0.68 0.386042
Target:  5'- gGUCGCGaccgacCCGCUCCaGGAgcUGgcauUGAUCAGc -3'
miRNA:   3'- -CAGCGC------GGCGAGGaCCU--AC----ACUAGUC- -5'
23117 5' -56.6 NC_005178.1 + 4525 0.69 0.367975
Target:  5'- --gGUGCCGC-CCaGGAUGUaaaGAUCGGg -3'
miRNA:   3'- cagCGCGGCGaGGaCCUACA---CUAGUC- -5'
23117 5' -56.6 NC_005178.1 + 16988 0.69 0.350497
Target:  5'- gGUCaGCGCCGCgaccuggcCCUGGAgcuggGUGA-CAGc -3'
miRNA:   3'- -CAG-CGCGGCGa-------GGACCUa----CACUaGUC- -5'
23117 5' -56.6 NC_005178.1 + 16927 0.71 0.279294
Target:  5'- aGUCG-GCC-CUCCUGGAuagcgcUGuUGAUCAGg -3'
miRNA:   3'- -CAGCgCGGcGAGGACCU------AC-ACUAGUC- -5'
23117 5' -56.6 NC_005178.1 + 13052 0.72 0.208478
Target:  5'- cGUCGCugaucaauGCCaGCUCCUGGAgcgGGUCGGu -3'
miRNA:   3'- -CAGCG--------CGG-CGAGGACCUacaCUAGUC- -5'
23117 5' -56.6 NC_005178.1 + 16850 1.07 0.000558
Target:  5'- gGUCGCGCCGCUCCUGGAUGUGAUCAGc -3'
miRNA:   3'- -CAGCGCGGCGAGGACCUACACUAGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.