Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23118 | 3' | -56.7 | NC_005178.1 | + | 12064 | 0.7 | 0.333097 |
Target: 5'- uCCUGGugAUGGuuGCGAcCAGCGCCUggUGGa -3' miRNA: 3'- -GGGCCuaUACC--UGCU-GUCGCGGG--ACC- -5' |
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23118 | 3' | -56.7 | NC_005178.1 | + | 6115 | 0.7 | 0.332287 |
Target: 5'- uCCUGGAgcagcUGGAuaucaggccagauCGGCAGCGCCCa-- -3' miRNA: 3'- -GGGCCUau---ACCU-------------GCUGUCGCGGGacc -5' |
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23118 | 3' | -56.7 | NC_005178.1 | + | 17888 | 0.71 | 0.301849 |
Target: 5'- uCCUGGAcccGGuACGcCAGCGCgCCUGGc -3' miRNA: 3'- -GGGCCUauaCC-UGCuGUCGCG-GGACC- -5' |
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23118 | 3' | -56.7 | NC_005178.1 | + | 30574 | 0.71 | 0.301849 |
Target: 5'- aUCCGuugGUGGuCGGCAGCGacaCCUGGc -3' miRNA: 3'- -GGGCcuaUACCuGCUGUCGCg--GGACC- -5' |
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23118 | 3' | -56.7 | NC_005178.1 | + | 17776 | 0.71 | 0.287092 |
Target: 5'- gCCGGGUuc-GACGGCagcccgauacagAGCGCCCUGa -3' miRNA: 3'- gGGCCUAuacCUGCUG------------UCGCGGGACc -5' |
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23118 | 3' | -56.7 | NC_005178.1 | + | 3011 | 0.71 | 0.28637 |
Target: 5'- gCCUGGAgcgcuuccUGGACcaGGCcgagcguGGCGCCCUGGu -3' miRNA: 3'- -GGGCCUau------ACCUG--CUG-------UCGCGGGACC- -5' |
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23118 | 3' | -56.7 | NC_005178.1 | + | 16861 | 0.71 | 0.279221 |
Target: 5'- uCCUGGAUGUgaucagccgcggaGGuaGCGAggccgagcugcuCGGCGCCCUGGc -3' miRNA: 3'- -GGGCCUAUA-------------CC--UGCU------------GUCGCGGGACC- -5' |
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23118 | 3' | -56.7 | NC_005178.1 | + | 31678 | 0.72 | 0.258629 |
Target: 5'- gCUGGAcgAUGGGCGGCcgagggccgguguAGCGgCCUGGc -3' miRNA: 3'- gGGCCUa-UACCUGCUG-------------UCGCgGGACC- -5' |
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23118 | 3' | -56.7 | NC_005178.1 | + | 21001 | 0.73 | 0.236191 |
Target: 5'- aCCGGGUucgccGUGGGCGGCAGCaccGCCaccggccugaccuacCUGGg -3' miRNA: 3'- gGGCCUA-----UACCUGCUGUCG---CGG---------------GACC- -5' |
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23118 | 3' | -56.7 | NC_005178.1 | + | 31229 | 0.74 | 0.18393 |
Target: 5'- cCCCGGAcugGGGCGACAGCaucgucgaGCgCCUGa -3' miRNA: 3'- -GGGCCUauaCCUGCUGUCG--------CG-GGACc -5' |
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23118 | 3' | -56.7 | NC_005178.1 | + | 28123 | 0.75 | 0.164964 |
Target: 5'- gCCUGGGcgGUGGcaccgAUGGCGGCGCCCaGGg -3' miRNA: 3'- -GGGCCUa-UACC-----UGCUGUCGCGGGaCC- -5' |
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23118 | 3' | -56.7 | NC_005178.1 | + | 14861 | 0.75 | 0.160505 |
Target: 5'- aCCCGGcgAuccagcucggccUGGGCGAgGuCGCCCUGGg -3' miRNA: 3'- -GGGCCuaU------------ACCUGCUgUcGCGGGACC- -5' |
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23118 | 3' | -56.7 | NC_005178.1 | + | 19829 | 0.76 | 0.143738 |
Target: 5'- gCUGGA---GGACGGCAGCG-CCUGGa -3' miRNA: 3'- gGGCCUauaCCUGCUGUCGCgGGACC- -5' |
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23118 | 3' | -56.7 | NC_005178.1 | + | 16924 | 1.11 | 0.000397 |
Target: 5'- uCCCGGAUAUGGACGACAGCGCCCUGGc -3' miRNA: 3'- -GGGCCUAUACCUGCUGUCGCGGGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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