Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23119 | 5' | -56.5 | NC_005178.1 | + | 2848 | 0.67 | 0.500522 |
Target: 5'- --gAUGCCGCgccgggucgaaCGgAUGCGGaacggcuGGCCAGGg -3' miRNA: 3'- cgaUACGGCG-----------GCgUAUGCU-------CCGGUCC- -5' |
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23119 | 5' | -56.5 | NC_005178.1 | + | 4811 | 0.68 | 0.411036 |
Target: 5'- ----cGCCGCCGCGccuacUACGuccAGGCCAa- -3' miRNA: 3'- cgauaCGGCGGCGU-----AUGC---UCCGGUcc -5' |
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23119 | 5' | -56.5 | NC_005178.1 | + | 4988 | 0.66 | 0.544567 |
Target: 5'- ---cUGUCGCCGCu-----GGCCAGGu -3' miRNA: 3'- cgauACGGCGGCGuaugcuCCGGUCC- -5' |
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23119 | 5' | -56.5 | NC_005178.1 | + | 5797 | 0.66 | 0.533696 |
Target: 5'- ----cGUCGCCgGCAUuaccuCG-GGCCAGGc -3' miRNA: 3'- cgauaCGGCGG-CGUAu----GCuCCGGUCC- -5' |
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23119 | 5' | -56.5 | NC_005178.1 | + | 5877 | 0.66 | 0.521828 |
Target: 5'- cCUcgGCCGCC-CAUcguccagcGCGAGacgcgccGCCAGGu -3' miRNA: 3'- cGAuaCGGCGGcGUA--------UGCUC-------CGGUCC- -5' |
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23119 | 5' | -56.5 | NC_005178.1 | + | 6050 | 0.73 | 0.213248 |
Target: 5'- ----cGCCGUCGCGgaaguCGAGGCCGGc -3' miRNA: 3'- cgauaCGGCGGCGUau---GCUCCGGUCc -5' |
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23119 | 5' | -56.5 | NC_005178.1 | + | 6510 | 0.69 | 0.355736 |
Target: 5'- ----cGCCGCCaccgugcGCAUGCGGuuGGCCAaGGg -3' miRNA: 3'- cgauaCGGCGG-------CGUAUGCU--CCGGU-CC- -5' |
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23119 | 5' | -56.5 | NC_005178.1 | + | 6730 | 0.67 | 0.454086 |
Target: 5'- gGCUgAUG-CGCCGCGUAgacgccggcccagguCGAGGCCGc- -3' miRNA: 3'- -CGA-UACgGCGGCGUAU---------------GCUCCGGUcc -5' |
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23119 | 5' | -56.5 | NC_005178.1 | + | 8489 | 0.66 | 0.544567 |
Target: 5'- cGCcGUGCCGCC-CAUcagGCGAaGGuuguaguaguCCAGGg -3' miRNA: 3'- -CGaUACGGCGGcGUA---UGCU-CC----------GGUCC- -5' |
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23119 | 5' | -56.5 | NC_005178.1 | + | 8563 | 0.67 | 0.470338 |
Target: 5'- uGCUAUcGgUGCCGCcc---AGGCCAGGg -3' miRNA: 3'- -CGAUA-CgGCGGCGuaugcUCCGGUCC- -5' |
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23119 | 5' | -56.5 | NC_005178.1 | + | 9345 | 0.67 | 0.500522 |
Target: 5'- cGCUcaggagcGUGCCGCCaGCA---GucGCCAGGg -3' miRNA: 3'- -CGA-------UACGGCGG-CGUaugCucCGGUCC- -5' |
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23119 | 5' | -56.5 | NC_005178.1 | + | 13826 | 0.68 | 0.430294 |
Target: 5'- gGgaGUuCCGCCGCcagauCGAGGCCgAGGu -3' miRNA: 3'- -CgaUAcGGCGGCGuau--GCUCCGG-UCC- -5' |
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23119 | 5' | -56.5 | NC_005178.1 | + | 13887 | 0.66 | 0.555509 |
Target: 5'- ----cGCCGCCcgGCGUgaACG-GGCCAGc -3' miRNA: 3'- cgauaCGGCGG--CGUA--UGCuCCGGUCc -5' |
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23119 | 5' | -56.5 | NC_005178.1 | + | 15272 | 0.66 | 0.512195 |
Target: 5'- gGCUucaucGcCCGCCGCcugGCG-GGCCAGc -3' miRNA: 3'- -CGAua---C-GGCGGCGua-UGCuCCGGUCc -5' |
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23119 | 5' | -56.5 | NC_005178.1 | + | 17312 | 0.66 | 0.522903 |
Target: 5'- cGCg--GCCGCUcgGCGUGCGAGaggcuCCAGa -3' miRNA: 3'- -CGauaCGGCGG--CGUAUGCUCc----GGUCc -5' |
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23119 | 5' | -56.5 | NC_005178.1 | + | 17416 | 1.13 | 0.000225 |
Target: 5'- cGCUAUGCCGCCGCAUACGAGGCCAGGg -3' miRNA: 3'- -CGAUACGGCGGCGUAUGCUCCGGUCC- -5' |
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23119 | 5' | -56.5 | NC_005178.1 | + | 17853 | 0.76 | 0.137 |
Target: 5'- aGCgccUGCCGCCcUcgGCGAGGuCCAGGa -3' miRNA: 3'- -CGau-ACGGCGGcGuaUGCUCC-GGUCC- -5' |
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23119 | 5' | -56.5 | NC_005178.1 | + | 19932 | 0.67 | 0.470338 |
Target: 5'- --aGUGCCGCCGCAgugauCGAGcGCgCAc- -3' miRNA: 3'- cgaUACGGCGGCGUau---GCUC-CG-GUcc -5' |
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23119 | 5' | -56.5 | NC_005178.1 | + | 20818 | 0.68 | 0.411036 |
Target: 5'- cCUggGCCaGCgcaGCgAUGCGAGGaCCAGGg -3' miRNA: 3'- cGAuaCGG-CGg--CG-UAUGCUCC-GGUCC- -5' |
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23119 | 5' | -56.5 | NC_005178.1 | + | 21346 | 0.7 | 0.299757 |
Target: 5'- ----cGCUGCgGCAUGgcCGAGGCCGGu -3' miRNA: 3'- cgauaCGGCGgCGUAU--GCUCCGGUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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