miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23120 5' -53.7 NC_005178.1 + 13871 0.66 0.687162
Target:  5'- cCGACCCGAa--GGcCAGCGCcgCccgGCg -3'
miRNA:   3'- -GCUGGGCUagaCC-GUCGUGuaGua-CG- -5'
23120 5' -53.7 NC_005178.1 + 9646 0.66 0.687162
Target:  5'- uCGAUCUGAUCUGcGCGGC-CGgug-GCu -3'
miRNA:   3'- -GCUGGGCUAGAC-CGUCGuGUaguaCG- -5'
23120 5' -53.7 NC_005178.1 + 8932 0.66 0.675818
Target:  5'- aCGGuuCCUGuAUCUGaGCGGCGCc-CAUGCu -3'
miRNA:   3'- -GCU--GGGC-UAGAC-CGUCGUGuaGUACG- -5'
23120 5' -53.7 NC_005178.1 + 2662 0.66 0.664429
Target:  5'- -uGCCuCGAUCaGGCGGCGCAcaGUGa -3'
miRNA:   3'- gcUGG-GCUAGaCCGUCGUGUagUACg -5'
23120 5' -53.7 NC_005178.1 + 31648 0.66 0.664429
Target:  5'- uCGGgUCGuagacCUGGCGGCGCGUCucGCg -3'
miRNA:   3'- -GCUgGGCua---GACCGUCGUGUAGuaCG- -5'
23120 5' -53.7 NC_005178.1 + 10271 0.66 0.661005
Target:  5'- cCGGCCacgcuggugguaguCGAgcagCUcGGCGGCACGUCcugGCg -3'
miRNA:   3'- -GCUGG--------------GCUa---GA-CCGUCGUGUAGua-CG- -5'
23120 5' -53.7 NC_005178.1 + 22789 0.67 0.641565
Target:  5'- cCGACCUGGUC-GaGCAGUACggCGagGCg -3'
miRNA:   3'- -GCUGGGCUAGaC-CGUCGUGuaGUa-CG- -5'
23120 5' -53.7 NC_005178.1 + 30812 0.68 0.56181
Target:  5'- uCGACCUGggCcGGCgucuacgcGGCGCAUCA-GCc -3'
miRNA:   3'- -GCUGGGCuaGaCCG--------UCGUGUAGUaCG- -5'
23120 5' -53.7 NC_005178.1 + 21008 0.68 0.555067
Target:  5'- uCGGCCCGGUcCUugaggucgaagaccaGGCggggGGCGCggCGUGCg -3'
miRNA:   3'- -GCUGGGCUA-GA---------------CCG----UCGUGuaGUACG- -5'
23120 5' -53.7 NC_005178.1 + 10844 0.69 0.517364
Target:  5'- -uGCCCGGUCaacUGGCAGcCACuuguUCggGCg -3'
miRNA:   3'- gcUGGGCUAG---ACCGUC-GUGu---AGuaCG- -5'
23120 5' -53.7 NC_005178.1 + 11391 0.69 0.506466
Target:  5'- -uGCCCGc-CUGGUGGCugAUCgGUGCg -3'
miRNA:   3'- gcUGGGCuaGACCGUCGugUAG-UACG- -5'
23120 5' -53.7 NC_005178.1 + 4743 0.69 0.484973
Target:  5'- cCGGCCUGGUCUGcuucuaCGGCcCGUCcgGCu -3'
miRNA:   3'- -GCUGGGCUAGACc-----GUCGuGUAGuaCG- -5'
23120 5' -53.7 NC_005178.1 + 11812 0.7 0.453581
Target:  5'- uCGACCC---CUGGCAGCAU-UCAgGCg -3'
miRNA:   3'- -GCUGGGcuaGACCGUCGUGuAGUaCG- -5'
23120 5' -53.7 NC_005178.1 + 28947 0.7 0.453581
Target:  5'- uGGCCgGAgacuUCcGGCgAGCGCGUgGUGCa -3'
miRNA:   3'- gCUGGgCU----AGaCCG-UCGUGUAgUACG- -5'
23120 5' -53.7 NC_005178.1 + 34640 0.72 0.323522
Target:  5'- gCGGCUCGAcCUGGCcgaGGCGCGcCAUGUc -3'
miRNA:   3'- -GCUGGGCUaGACCG---UCGUGUaGUACG- -5'
23120 5' -53.7 NC_005178.1 + 23723 0.73 0.315369
Target:  5'- uCGGCCuCGAUCUGGCGGCGgAacUCccccGCa -3'
miRNA:   3'- -GCUGG-GCUAGACCGUCGUgU--AGua--CG- -5'
23120 5' -53.7 NC_005178.1 + 33021 0.75 0.211414
Target:  5'- gGACCCGAUCUuuacauccugGGCGGCACcgagggcauUCcgGCa -3'
miRNA:   3'- gCUGGGCUAGA----------CCGUCGUGu--------AGuaCG- -5'
23120 5' -53.7 NC_005178.1 + 17534 1.12 0.000548
Target:  5'- aCGACCCGAUCUGGCAGCACAUCAUGCc -3'
miRNA:   3'- -GCUGGGCUAGACCGUCGUGUAGUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.