Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23121 | 3' | -56.7 | NC_005178.1 | + | 34236 | 0.66 | 0.609317 |
Target: 5'- gUCgCAGGaAUAGACG---UCGGUCGGg -3' miRNA: 3'- -GGgGUCCcUGUCUGCuacAGCCAGCC- -5' |
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23121 | 3' | -56.7 | NC_005178.1 | + | 379 | 0.67 | 0.523297 |
Target: 5'- cCUCCAGGcGCAG-CGG-GUCGGacUCGGu -3' miRNA: 3'- -GGGGUCCcUGUCuGCUaCAGCC--AGCC- -5' |
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23121 | 3' | -56.7 | NC_005178.1 | + | 17060 | 0.67 | 0.509714 |
Target: 5'- -aCCGGGGGCggcgaccuucagcuGGGCGGUGgCGG-CGGc -3' miRNA: 3'- ggGGUCCCUG--------------UCUGCUACaGCCaGCC- -5' |
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23121 | 3' | -56.7 | NC_005178.1 | + | 2884 | 0.68 | 0.49218 |
Target: 5'- -gCCAGGGuucaggcuACGGGCGcgG-CGGUCGa -3' miRNA: 3'- ggGGUCCC--------UGUCUGCuaCaGCCAGCc -5' |
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23121 | 3' | -56.7 | NC_005178.1 | + | 5528 | 0.68 | 0.481996 |
Target: 5'- -aCCAGGGuCAGGucguCGgcGUgGGUCGGc -3' miRNA: 3'- ggGGUCCCuGUCU----GCuaCAgCCAGCC- -5' |
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23121 | 3' | -56.7 | NC_005178.1 | + | 32231 | 0.68 | 0.461942 |
Target: 5'- gCUCCAGGuuCAGGCGcUGgaGGUCGGc -3' miRNA: 3'- -GGGGUCCcuGUCUGCuACagCCAGCC- -5' |
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23121 | 3' | -56.7 | NC_005178.1 | + | 14941 | 0.68 | 0.452082 |
Target: 5'- -aUCGGGaGACAGGCGuccUGgacgUGGUCGGg -3' miRNA: 3'- ggGGUCC-CUGUCUGCu--ACa---GCCAGCC- -5' |
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23121 | 3' | -56.7 | NC_005178.1 | + | 26551 | 0.69 | 0.432712 |
Target: 5'- aCCUCcGGGGCGGAUuuGGUGUa-GUCGGa -3' miRNA: 3'- -GGGGuCCCUGUCUG--CUACAgcCAGCC- -5' |
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23121 | 3' | -56.7 | NC_005178.1 | + | 32861 | 0.69 | 0.422267 |
Target: 5'- uCUCCAGGGcgauaucGCaaaGGGCGAUGUUGGcgaugUCGGc -3' miRNA: 3'- -GGGGUCCC-------UG---UCUGCUACAGCC-----AGCC- -5' |
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23121 | 3' | -56.7 | NC_005178.1 | + | 15541 | 0.69 | 0.413835 |
Target: 5'- gUCCAGcaGGAacCAGGCGGUGUCGGacUCGa -3' miRNA: 3'- gGGGUC--CCU--GUCUGCUACAGCC--AGCc -5' |
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23121 | 3' | -56.7 | NC_005178.1 | + | 30687 | 0.69 | 0.404588 |
Target: 5'- gCCCCAGGccGACAGAuCGAUugcgCGGUCc- -3' miRNA: 3'- -GGGGUCC--CUGUCU-GCUAca--GCCAGcc -5' |
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23121 | 3' | -56.7 | NC_005178.1 | + | 34582 | 0.7 | 0.351937 |
Target: 5'- -aCCGGGGAgcuggcCGGGCGA-GUCGGUgagCGGg -3' miRNA: 3'- ggGGUCCCU------GUCUGCUaCAGCCA---GCC- -5' |
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23121 | 3' | -56.7 | NC_005178.1 | + | 7073 | 0.71 | 0.327494 |
Target: 5'- gCCCGGcccuGGGCgAGGCGGUGaccUCGGUCGa -3' miRNA: 3'- gGGGUC----CCUG-UCUGCUAC---AGCCAGCc -5' |
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23121 | 3' | -56.7 | NC_005178.1 | + | 26088 | 0.73 | 0.224282 |
Target: 5'- gCCCgAGGGGCGGACGcUGcCGcagcGUCGGc -3' miRNA: 3'- -GGGgUCCCUGUCUGCuACaGC----CAGCC- -5' |
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23121 | 3' | -56.7 | NC_005178.1 | + | 28663 | 0.74 | 0.20402 |
Target: 5'- gCCCAGGGucuggauguacCGGGCGAUGgagcccagguuucgCGGUCGGu -3' miRNA: 3'- gGGGUCCCu----------GUCUGCUACa-------------GCCAGCC- -5' |
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23121 | 3' | -56.7 | NC_005178.1 | + | 28149 | 0.75 | 0.18636 |
Target: 5'- gCCCAGGGGCuGACG--GUCGGcgccUCGGc -3' miRNA: 3'- gGGGUCCCUGuCUGCuaCAGCC----AGCC- -5' |
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23121 | 3' | -56.7 | NC_005178.1 | + | 19564 | 0.77 | 0.123331 |
Target: 5'- aCCCuGGGcagccgcAUAGGUGAUGUCGGUCGGa -3' miRNA: 3'- gGGGuCCC-------UGUCUGCUACAGCCAGCC- -5' |
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23121 | 3' | -56.7 | NC_005178.1 | + | 17943 | 0.99 | 0.003606 |
Target: 5'- gCCCCAGGGACAGACGAUGUC-GUCGGc -3' miRNA: 3'- -GGGGUCCCUGUCUGCUACAGcCAGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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