miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23122 3' -61.2 NC_005178.1 + 11751 0.66 0.351844
Target:  5'- gGCG-GuCCCGUugCUCCUGGagCUUGGc -3'
miRNA:   3'- -CGCgC-GGGCAugGAGGGCCagGAGUC- -5'
23122 3' -61.2 NC_005178.1 + 19413 0.67 0.304889
Target:  5'- gGCGCGCagCCGaGCUgCUCGG-CCUCGGu -3'
miRNA:   3'- -CGCGCG--GGCaUGGaGGGCCaGGAGUC- -5'
23122 3' -61.2 NC_005178.1 + 20028 0.67 0.282577
Target:  5'- cCGCGCCCGcUGCCggccguuUCCUGGaCUUCGa -3'
miRNA:   3'- cGCGCGGGC-AUGG-------AGGGCCaGGAGUc -5'
23122 3' -61.2 NC_005178.1 + 10053 0.67 0.275661
Target:  5'- cUGCGCCUugaccauGUugUUCCUGG-CCUCGGc -3'
miRNA:   3'- cGCGCGGG-------CAugGAGGGCCaGGAGUC- -5'
23122 3' -61.2 NC_005178.1 + 16469 0.67 0.269553
Target:  5'- uCGCGaucuacUCUGgccCCUCCUGGUCCUCAa -3'
miRNA:   3'- cGCGC------GGGCau-GGAGGGCCAGGAGUc -5'
23122 3' -61.2 NC_005178.1 + 16526 0.67 0.269553
Target:  5'- cCGCGCCCc--CCgCCUGGUCUUCGa -3'
miRNA:   3'- cGCGCGGGcauGGaGGGCCAGGAGUc -5'
23122 3' -61.2 NC_005178.1 + 27574 0.68 0.25637
Target:  5'- gGCGuCGCCCG-GCCUUgCCGGuugcUCUUCGGu -3'
miRNA:   3'- -CGC-GCGGGCaUGGAG-GGCC----AGGAGUC- -5'
23122 3' -61.2 NC_005178.1 + 23234 0.68 0.243721
Target:  5'- aGCGCaUCCGcGCCgaggugCCCGGcCUUCAGg -3'
miRNA:   3'- -CGCGcGGGCaUGGa-----GGGCCaGGAGUC- -5'
23122 3' -61.2 NC_005178.1 + 19213 0.68 0.243721
Target:  5'- gGCGCuCCUGgACCUCgCGGUCCacCAGc -3'
miRNA:   3'- -CGCGcGGGCaUGGAGgGCCAGGa-GUC- -5'
23122 3' -61.2 NC_005178.1 + 19663 0.69 0.228056
Target:  5'- gGCGCGCUggCGUACCggguccaggagcacgUCCUGGaCCUCGc -3'
miRNA:   3'- -CGCGCGG--GCAUGG---------------AGGGCCaGGAGUc -5'
23122 3' -61.2 NC_005178.1 + 27210 0.71 0.154834
Target:  5'- aGCGCaGCCCGgcgcgcuucgccccuCCgcgCCCGGcCCUCGGc -3'
miRNA:   3'- -CGCG-CGGGCau-------------GGa--GGGCCaGGAGUC- -5'
23122 3' -61.2 NC_005178.1 + 19729 0.71 0.151941
Target:  5'- gGUGCGCUCG-GCCUuguuguacagcaCCUGGUCCaUCAGg -3'
miRNA:   3'- -CGCGCGGGCaUGGA------------GGGCCAGG-AGUC- -5'
23122 3' -61.2 NC_005178.1 + 11161 0.73 0.106474
Target:  5'- cGC-CGCCCuggGCUUCCUGGUCCUguGg -3'
miRNA:   3'- -CGcGCGGGca-UGGAGGGCCAGGAguC- -5'
23122 3' -61.2 NC_005178.1 + 18676 1.1 0.000158
Target:  5'- gGCGCGCCCGUACCUCCCGGUCCUCAGa -3'
miRNA:   3'- -CGCGCGGGCAUGGAGGGCCAGGAGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.