Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 23123 | 3' | -53.2 | NC_005178.1 | + | 9905 | 0.67 | 0.607307 |
|
Target: 5'- --aCGG-CAgcGGCGGCACGUUGacCCUg -3' miRNA: 3'- uaaGCCuGU--UCGCCGUGUAACacGGA- -5' |
|||||||
| 23123 | 3' | -53.2 | NC_005178.1 | + | 9871 | 0.67 | 0.607307 |
|
Target: 5'- -aUCGaACAAGCGGCGCuGUUGcgcGCCc -3' miRNA: 3'- uaAGCcUGUUCGCCGUG-UAACa--CGGa -5' |
|||||||
| 23123 | 3' | -53.2 | NC_005178.1 | + | 18713 | 0.7 | 0.447455 |
|
Target: 5'- -gUUGuGGCuGGCaugacgcuagauuaGGCACAUUGUGCCUa -3' miRNA: 3'- uaAGC-CUGuUCG--------------CCGUGUAACACGGA- -5' |
|||||||
| 23123 | 3' | -53.2 | NC_005178.1 | + | 25432 | 0.7 | 0.440192 |
|
Target: 5'- -gUCGGcGCAGGCGGCGCGcccaucgGCCa -3' miRNA: 3'- uaAGCC-UGUUCGCCGUGUaaca---CGGa -5' |
|||||||
| 23123 | 3' | -53.2 | NC_005178.1 | + | 30266 | 0.7 | 0.429935 |
|
Target: 5'- cAUUCGGuACAgcGGCGGCGgCAgcGUGCUg -3' miRNA: 3'- -UAAGCC-UGU--UCGCCGU-GUaaCACGGa -5' |
|||||||
| 23123 | 3' | -53.2 | NC_005178.1 | + | 20414 | 0.7 | 0.418817 |
|
Target: 5'- -cUCGGGCAugGGUGGCcgcgucaACAUcGUGCCa -3' miRNA: 3'- uaAGCCUGU--UCGCCG-------UGUAaCACGGa -5' |
|||||||
| 23123 | 3' | -53.2 | NC_005178.1 | + | 18787 | 1.06 | 0.001176 |
|
Target: 5'- aAUUCGGACAAGCGGCACAUUGUGCCUa -3' miRNA: 3'- -UAAGCCUGUUCGCCGUGUAACACGGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home