miRNA display CGI


Results 1 - 20 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23124 3' -53.1 NC_005178.1 + 95 0.66 0.719182
Target:  5'- gCUGAacucgGCCUCCAucgcuuCCAUcaGAUCgAGGCa -3'
miRNA:   3'- -GACUg----CGGAGGUu-----GGUG--UUAGgUCUG- -5'
23124 3' -53.1 NC_005178.1 + 2396 0.67 0.619484
Target:  5'- gUGACGuCCUCCAGCCggcuggcguucgucaACGugacgacGUUCGGACc -3'
miRNA:   3'- gACUGC-GGAGGUUGG---------------UGU-------UAGGUCUG- -5'
23124 3' -53.1 NC_005178.1 + 5151 0.66 0.719182
Target:  5'- -gGACGCC-CgCAACCugGcgCCGGuCu -3'
miRNA:   3'- gaCUGCGGaG-GUUGGugUuaGGUCuG- -5'
23124 3' -53.1 NC_005178.1 + 6327 0.67 0.650689
Target:  5'- gCUGuCGCC-CCAGuCCgggGCGaacGUCCAGGCg -3'
miRNA:   3'- -GACuGCGGaGGUU-GG---UGU---UAGGUCUG- -5'
23124 3' -53.1 NC_005178.1 + 6746 0.7 0.459106
Target:  5'- -aGACGCCggcCCAggucgagGCCGCGAccgcugCCAGGCg -3'
miRNA:   3'- gaCUGCGGa--GGU-------UGGUGUUa-----GGUCUG- -5'
23124 3' -53.1 NC_005178.1 + 7297 0.66 0.73034
Target:  5'- -cGACGCCgcCCGGCUGC--UCCAGcGCa -3'
miRNA:   3'- gaCUGCGGa-GGUUGGUGuuAGGUC-UG- -5'
23124 3' -53.1 NC_005178.1 + 8857 0.73 0.33616
Target:  5'- -cGACGCCaCCGACCGCGAaacCUGGGCu -3'
miRNA:   3'- gaCUGCGGaGGUUGGUGUUa--GGUCUG- -5'
23124 3' -53.1 NC_005178.1 + 9423 0.68 0.604478
Target:  5'- -gGGCGCCgCCAucgguGCCACcgcCCAGGCc -3'
miRNA:   3'- gaCUGCGGaGGU-----UGGUGuuaGGUCUG- -5'
23124 3' -53.1 NC_005178.1 + 10141 0.66 0.719182
Target:  5'- --aGCGCCUCCAgcGCCugGAUUucccccucaUAGGCu -3'
miRNA:   3'- gacUGCGGAGGU--UGGugUUAG---------GUCUG- -5'
23124 3' -53.1 NC_005178.1 + 10568 0.69 0.536131
Target:  5'- uUGccuCGuCCUCCAGguaGCGAUCCAGGCg -3'
miRNA:   3'- gACu--GC-GGAGGUUgg-UGUUAGGUCUG- -5'
23124 3' -53.1 NC_005178.1 + 11700 0.69 0.513908
Target:  5'- aCUGACcuGCCgaaaugCCGGCCACGG-CCAuGGCg -3'
miRNA:   3'- -GACUG--CGGa-----GGUUGGUGUUaGGU-CUG- -5'
23124 3' -53.1 NC_005178.1 + 12953 0.67 0.627575
Target:  5'- gCUGGCcgGCCUgguGACC-CAGUCCAGGCc -3'
miRNA:   3'- -GACUG--CGGAgg-UUGGuGUUAGGUCUG- -5'
23124 3' -53.1 NC_005178.1 + 13708 0.68 0.581486
Target:  5'- uUGAUGCCgCCGuaggcACCAgCAAUCCAGuCc -3'
miRNA:   3'- gACUGCGGaGGU-----UGGU-GUUAGGUCuG- -5'
23124 3' -53.1 NC_005178.1 + 15179 0.67 0.673728
Target:  5'- ----aGCCUCCAGCCGCAcauggCCAacGGCc -3'
miRNA:   3'- gacugCGGAGGUUGGUGUua---GGU--CUG- -5'
23124 3' -53.1 NC_005178.1 + 15247 0.68 0.581486
Target:  5'- gCUG-CGCCacuucCCGGCCGCAGaCCAcGACg -3'
miRNA:   3'- -GACuGCGGa----GGUUGGUGUUaGGU-CUG- -5'
23124 3' -53.1 NC_005178.1 + 19340 1.09 0.000922
Target:  5'- cCUGACGCCUCCAACCACAAUCCAGACc -3'
miRNA:   3'- -GACUGCGGAGGUUGGUGUUAGGUCUG- -5'
23124 3' -53.1 NC_005178.1 + 20086 0.69 0.524975
Target:  5'- gUGACGCUgUCCAugaccGCCACAuacAUCCAGu- -3'
miRNA:   3'- gACUGCGG-AGGU-----UGGUGU---UAGGUCug -5'
23124 3' -53.1 NC_005178.1 + 20154 0.66 0.696593
Target:  5'- ---cCGUCUUCAGCUACGccCCGGACg -3'
miRNA:   3'- gacuGCGGAGGUUGGUGUuaGGUCUG- -5'
23124 3' -53.1 NC_005178.1 + 20264 0.67 0.627575
Target:  5'- uCUGACGCCcccaCCAGCCuuuggccUCCAGGa -3'
miRNA:   3'- -GACUGCGGa---GGUUGGuguu---AGGUCUg -5'
23124 3' -53.1 NC_005178.1 + 20488 0.71 0.409524
Target:  5'- aUGGCgGCCUCCGGCCGCAuggCgaAGAUg -3'
miRNA:   3'- gACUG-CGGAGGUUGGUGUua-Gg-UCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.