miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23124 3' -53.1 NC_005178.1 + 13708 0.68 0.581486
Target:  5'- uUGAUGCCgCCGuaggcACCAgCAAUCCAGuCc -3'
miRNA:   3'- gACUGCGGaGGU-----UGGU-GUUAGGUCuG- -5'
23124 3' -53.1 NC_005178.1 + 15247 0.68 0.581486
Target:  5'- gCUG-CGCCacuucCCGGCCGCAGaCCAcGACg -3'
miRNA:   3'- -GACuGCGGa----GGUUGGUGUUaGGU-CUG- -5'
23124 3' -53.1 NC_005178.1 + 10568 0.69 0.536131
Target:  5'- uUGccuCGuCCUCCAGguaGCGAUCCAGGCg -3'
miRNA:   3'- gACu--GC-GGAGGUUgg-UGUUAGGUCUG- -5'
23124 3' -53.1 NC_005178.1 + 20086 0.69 0.524975
Target:  5'- gUGACGCUgUCCAugaccGCCACAuacAUCCAGu- -3'
miRNA:   3'- gACUGCGG-AGGU-----UGGUGU---UAGGUCug -5'
23124 3' -53.1 NC_005178.1 + 11700 0.69 0.513908
Target:  5'- aCUGACcuGCCgaaaugCCGGCCACGG-CCAuGGCg -3'
miRNA:   3'- -GACUG--CGGa-----GGUUGGUGUUaGGU-CUG- -5'
23124 3' -53.1 NC_005178.1 + 22596 0.69 0.502938
Target:  5'- aUGGCgGCCU-CGACCAC-GUCCAGgACg -3'
miRNA:   3'- gACUG-CGGAgGUUGGUGuUAGGUC-UG- -5'
23124 3' -53.1 NC_005178.1 + 30834 0.69 0.499667
Target:  5'- aUGGCGgcaCCUCCuggcucagcagugaGGCCGCccGGUCCAGGCg -3'
miRNA:   3'- gACUGC---GGAGG--------------UUGGUG--UUAGGUCUG- -5'
23124 3' -53.1 NC_005178.1 + 37120 0.7 0.470672
Target:  5'- -cGACGaCCUCCucGCCGaGGUCCAGGa -3'
miRNA:   3'- gaCUGC-GGAGGu-UGGUgUUAGGUCUg -5'
23124 3' -53.1 NC_005178.1 + 27310 0.7 0.460151
Target:  5'- -cGAUGCgUCCGGCCAU-GUCgCGGACg -3'
miRNA:   3'- gaCUGCGgAGGUUGGUGuUAG-GUCUG- -5'
23124 3' -53.1 NC_005178.1 + 6746 0.7 0.459106
Target:  5'- -aGACGCCggcCCAggucgagGCCGCGAccgcugCCAGGCg -3'
miRNA:   3'- gaCUGCGGa--GGU-------UGGUGUUa-----GGUCUG- -5'
23124 3' -53.1 NC_005178.1 + 31585 0.7 0.457019
Target:  5'- gUGAcCGCCgCCGGCCugGaccugguccgccccGUCCAGGCc -3'
miRNA:   3'- gACU-GCGGaGGUUGGugU--------------UAGGUCUG- -5'
23124 3' -53.1 NC_005178.1 + 20488 0.71 0.409524
Target:  5'- aUGGCgGCCUCCGGCCGCAuggCgaAGAUg -3'
miRNA:   3'- gACUG-CGGAGGUUGGUGUua-Gg-UCUG- -5'
23124 3' -53.1 NC_005178.1 + 8857 0.73 0.33616
Target:  5'- -cGACGCCaCCGACCGCGAaacCUGGGCu -3'
miRNA:   3'- gaCUGCGGaGGUUGGUGUUa--GGUCUG- -5'
23124 3' -53.1 NC_005178.1 + 19340 1.09 0.000922
Target:  5'- cCUGACGCCUCCAACCACAAUCCAGACc -3'
miRNA:   3'- -GACUGCGGAGGUUGGUGUUAGGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.