miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23124 5' -56.7 NC_005178.1 + 8173 0.68 0.373017
Target:  5'- gCUGCGCucguagGGGCUGCUgAugccccGGu--GCCGGu -3'
miRNA:   3'- -GACGCG------CCCGACGAgU------UCuuuCGGCC- -5'
23124 5' -56.7 NC_005178.1 + 9334 0.68 0.400519
Target:  5'- -aGCgGCGGcGCcGCUCAGGAGcguGCCGc -3'
miRNA:   3'- gaCG-CGCC-CGaCGAGUUCUUu--CGGCc -5'
23124 5' -56.7 NC_005178.1 + 9655 0.66 0.53303
Target:  5'- uCUGCGCGGcCggugGCUUcgccGAGCCGGc -3'
miRNA:   3'- -GACGCGCCcGa---CGAGuucuUUCGGCC- -5'
23124 5' -56.7 NC_005178.1 + 10350 0.7 0.313997
Target:  5'- -cGCGcCGGGCUGCgcuGGccGAGCUGGu -3'
miRNA:   3'- gaCGC-GCCCGACGaguUCu-UUCGGCC- -5'
23124 5' -56.7 NC_005178.1 + 13321 0.71 0.242383
Target:  5'- -gGCGcCGGGCUGCUCGcGcu-GUCGGu -3'
miRNA:   3'- gaCGC-GCCCGACGAGUuCuuuCGGCC- -5'
23124 5' -56.7 NC_005178.1 + 14009 0.67 0.483955
Target:  5'- cCUGCgggcuGCGGGCcaGCggagugacgcccugaUCAGGAAcccAGCCGGu -3'
miRNA:   3'- -GACG-----CGCCCGa-CG---------------AGUUCUU---UCGGCC- -5'
23124 5' -56.7 NC_005178.1 + 18404 0.68 0.40997
Target:  5'- aUGCGCGGcaucGCUGCUgAAcuGuuGGCCGa -3'
miRNA:   3'- gACGCGCC----CGACGAgUU--CuuUCGGCc -5'
23124 5' -56.7 NC_005178.1 + 18995 0.7 0.306166
Target:  5'- -gGCGCGGGUUGUgaUCGAGcgcGCCaGGg -3'
miRNA:   3'- gaCGCGCCCGACG--AGUUCuuuCGG-CC- -5'
23124 5' -56.7 NC_005178.1 + 19375 1.1 0.000375
Target:  5'- cCUGCGCGGGCUGCUCAAGAAAGCCGGc -3'
miRNA:   3'- -GACGCGCCCGACGAGUUCUUUCGGCC- -5'
23124 5' -56.7 NC_005178.1 + 20210 0.74 0.174951
Target:  5'- -gGCGCGGGCUGC-CGAGcuGGgCGa -3'
miRNA:   3'- gaCGCGCCCGACGaGUUCuuUCgGCc -5'
23124 5' -56.7 NC_005178.1 + 20812 0.66 0.499734
Target:  5'- cCU-CGCGGuuUGCUCGgccaugcAGAucAAGCCGGa -3'
miRNA:   3'- -GAcGCGCCcgACGAGU-------UCU--UUCGGCC- -5'
23124 5' -56.7 NC_005178.1 + 21043 0.71 0.255531
Target:  5'- -gGCGCGGcgUGCgUCGAGGuuGCCGGa -3'
miRNA:   3'- gaCGCGCCcgACG-AGUUCUuuCGGCC- -5'
23124 5' -56.7 NC_005178.1 + 22062 0.67 0.469447
Target:  5'- gUGCGCGGucuGCUGCUUgcGcagcuGCUGGg -3'
miRNA:   3'- gACGCGCC---CGACGAGuuCuuu--CGGCC- -5'
23124 5' -56.7 NC_005178.1 + 23487 0.71 0.255531
Target:  5'- gCUGCucgGCcGGCUGCUCAAGGcacugaccGGCUGGg -3'
miRNA:   3'- -GACG---CGcCCGACGAGUUCUu-------UCGGCC- -5'
23124 5' -56.7 NC_005178.1 + 24398 0.67 0.469447
Target:  5'- gUGCuGCGGGaaccGCUCAcGGAugAAGCUGGc -3'
miRNA:   3'- gACG-CGCCCga--CGAGU-UCU--UUCGGCC- -5'
23124 5' -56.7 NC_005178.1 + 26457 0.67 0.479788
Target:  5'- -aGCGCGGcGCUGCcggcCGAGGuggauGCgGGa -3'
miRNA:   3'- gaCGCGCC-CGACGa---GUUCUuu---CGgCC- -5'
23124 5' -56.7 NC_005178.1 + 26726 0.66 0.500794
Target:  5'- -gGCGCcuGGGacgaaaUGCUCGGcGugGGCCGGa -3'
miRNA:   3'- gaCGCG--CCCg-----ACGAGUU-CuuUCGGCC- -5'
23124 5' -56.7 NC_005178.1 + 26795 0.71 0.276342
Target:  5'- -cGCGgGGGCUGCgu-AGAGAcGuuGGg -3'
miRNA:   3'- gaCGCgCCCGACGaguUCUUU-CggCC- -5'
23124 5' -56.7 NC_005178.1 + 28299 0.69 0.364139
Target:  5'- gCUGCG-GGaGCUGC-CGGGGccGCUGGa -3'
miRNA:   3'- -GACGCgCC-CGACGaGUUCUuuCGGCC- -5'
23124 5' -56.7 NC_005178.1 + 28459 0.68 0.419557
Target:  5'- --aUGCGGGUgcgaauuuucUGCUCGAcgaucuucuGGAGGCCGGu -3'
miRNA:   3'- gacGCGCCCG----------ACGAGUU---------CUUUCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.