miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23125 5' -56.4 NC_005178.1 + 11537 0.66 0.532358
Target:  5'- uUgACCUGAU-CGCCCaGCGccugaAACGuCGCg -3'
miRNA:   3'- uAgUGGACUAgGCGGG-CGU-----UUGC-GCG- -5'
23125 5' -56.4 NC_005178.1 + 11003 0.66 0.521483
Target:  5'- -aCACCaaAUCCGCCCcggagguagGC-AAUGCGCa -3'
miRNA:   3'- uaGUGGacUAGGCGGG---------CGuUUGCGCG- -5'
23125 5' -56.4 NC_005178.1 + 1738 0.66 0.510697
Target:  5'- cUCGCCgaacUGggCCGCCUugaGCGGACcCGCg -3'
miRNA:   3'- uAGUGG----ACuaGGCGGG---CGUUUGcGCG- -5'
23125 5' -56.4 NC_005178.1 + 11380 0.66 0.510697
Target:  5'- gAUUGCC-GGUCUGCCCGCcuGGugGCu- -3'
miRNA:   3'- -UAGUGGaCUAGGCGGGCG--UUugCGcg -5'
23125 5' -56.4 NC_005178.1 + 18979 0.66 0.496815
Target:  5'- -gCGCCUGGUCaCGgUCGgcgcggguugugauCGAGCGCGCc -3'
miRNA:   3'- uaGUGGACUAG-GCgGGC--------------GUUUGCGCG- -5'
23125 5' -56.4 NC_005178.1 + 31212 0.67 0.468549
Target:  5'- cAUCGCCUGGacgUUCGCCC-CGGACugGgGCg -3'
miRNA:   3'- -UAGUGGACU---AGGCGGGcGUUUG--CgCG- -5'
23125 5' -56.4 NC_005178.1 + 33486 0.67 0.448153
Target:  5'- gGUCGCCgugGAauuccUCCaGCUCGCGGGCGaaguaGCg -3'
miRNA:   3'- -UAGUGGa--CU-----AGG-CGGGCGUUUGCg----CG- -5'
23125 5' -56.4 NC_005178.1 + 12685 0.68 0.418509
Target:  5'- gGUUGCCUGcggCCuGCUCGCG-GCGCGUa -3'
miRNA:   3'- -UAGUGGACua-GG-CGGGCGUuUGCGCG- -5'
23125 5' -56.4 NC_005178.1 + 32240 0.68 0.418509
Target:  5'- -cCGCCUGGUcgagCCGaCCGauguAGCGCGCa -3'
miRNA:   3'- uaGUGGACUA----GGCgGGCgu--UUGCGCG- -5'
23125 5' -56.4 NC_005178.1 + 24605 0.68 0.408895
Target:  5'- gGUCACCaGG-CCGgCCaGCAccuGGCGCGCc -3'
miRNA:   3'- -UAGUGGaCUaGGCgGG-CGU---UUGCGCG- -5'
23125 5' -56.4 NC_005178.1 + 11965 0.68 0.390087
Target:  5'- cUCGgCUGcaacugCUGUUCGCGGGCGCGCu -3'
miRNA:   3'- uAGUgGACua----GGCGGGCGUUUGCGCG- -5'
23125 5' -56.4 NC_005178.1 + 12079 0.68 0.380898
Target:  5'- uUCAUCcGAUCCGaacuuUCCGCcAGCGCGUc -3'
miRNA:   3'- uAGUGGaCUAGGC-----GGGCGuUUGCGCG- -5'
23125 5' -56.4 NC_005178.1 + 6717 0.69 0.362958
Target:  5'- gAUCACCUcuaccggcuGAUgCGCCgCGUAGACGCcgGCc -3'
miRNA:   3'- -UAGUGGA---------CUAgGCGG-GCGUUUGCG--CG- -5'
23125 5' -56.4 NC_005178.1 + 11586 0.69 0.362077
Target:  5'- uGUC-CUUGAUCUGCCCGCcuugcugGAugGCa- -3'
miRNA:   3'- -UAGuGGACUAGGCGGGCG-------UUugCGcg -5'
23125 5' -56.4 NC_005178.1 + 28185 0.69 0.354211
Target:  5'- -cCugCUGcgguUCCuCaCCGCGAGCGCGCc -3'
miRNA:   3'- uaGugGACu---AGGcG-GGCGUUUGCGCG- -5'
23125 5' -56.4 NC_005178.1 + 11079 0.69 0.353344
Target:  5'- --uGCCUGAUCCcgcauccaccucgGCCgGCAGcgcCGCGCu -3'
miRNA:   3'- uagUGGACUAGG-------------CGGgCGUUu--GCGCG- -5'
23125 5' -56.4 NC_005178.1 + 22390 0.69 0.345613
Target:  5'- aAUCGCCcuGUCCGCCCuGacuGAgGCGCa -3'
miRNA:   3'- -UAGUGGacUAGGCGGG-Cgu-UUgCGCG- -5'
23125 5' -56.4 NC_005178.1 + 11597 0.7 0.320727
Target:  5'- gAUCgaGCCccGAUUCGCCCGCuucgacacCGCGCa -3'
miRNA:   3'- -UAG--UGGa-CUAGGCGGGCGuuu-----GCGCG- -5'
23125 5' -56.4 NC_005178.1 + 37233 0.71 0.274332
Target:  5'- uUCGCCUGGaugaccaUCucuaugcaaagCGCCUGCAAAgGCGCu -3'
miRNA:   3'- uAGUGGACU-------AG-----------GCGGGCGUUUgCGCG- -5'
23125 5' -56.4 NC_005178.1 + 18101 0.73 0.183653
Target:  5'- -gCGCCUGGcCCaGCCCGCcAugGUGCu -3'
miRNA:   3'- uaGUGGACUaGG-CGGGCGuUugCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.