Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23125 | 5' | -56.4 | NC_005178.1 | + | 11537 | 0.66 | 0.532358 |
Target: 5'- uUgACCUGAU-CGCCCaGCGccugaAACGuCGCg -3' miRNA: 3'- uAgUGGACUAgGCGGG-CGU-----UUGC-GCG- -5' |
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23125 | 5' | -56.4 | NC_005178.1 | + | 11003 | 0.66 | 0.521483 |
Target: 5'- -aCACCaaAUCCGCCCcggagguagGC-AAUGCGCa -3' miRNA: 3'- uaGUGGacUAGGCGGG---------CGuUUGCGCG- -5' |
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23125 | 5' | -56.4 | NC_005178.1 | + | 11380 | 0.66 | 0.510697 |
Target: 5'- gAUUGCC-GGUCUGCCCGCcuGGugGCu- -3' miRNA: 3'- -UAGUGGaCUAGGCGGGCG--UUugCGcg -5' |
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23125 | 5' | -56.4 | NC_005178.1 | + | 1738 | 0.66 | 0.510697 |
Target: 5'- cUCGCCgaacUGggCCGCCUugaGCGGACcCGCg -3' miRNA: 3'- uAGUGG----ACuaGGCGGG---CGUUUGcGCG- -5' |
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23125 | 5' | -56.4 | NC_005178.1 | + | 18979 | 0.66 | 0.496815 |
Target: 5'- -gCGCCUGGUCaCGgUCGgcgcggguugugauCGAGCGCGCc -3' miRNA: 3'- uaGUGGACUAG-GCgGGC--------------GUUUGCGCG- -5' |
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23125 | 5' | -56.4 | NC_005178.1 | + | 31212 | 0.67 | 0.468549 |
Target: 5'- cAUCGCCUGGacgUUCGCCC-CGGACugGgGCg -3' miRNA: 3'- -UAGUGGACU---AGGCGGGcGUUUG--CgCG- -5' |
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23125 | 5' | -56.4 | NC_005178.1 | + | 33486 | 0.67 | 0.448153 |
Target: 5'- gGUCGCCgugGAauuccUCCaGCUCGCGGGCGaaguaGCg -3' miRNA: 3'- -UAGUGGa--CU-----AGG-CGGGCGUUUGCg----CG- -5' |
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23125 | 5' | -56.4 | NC_005178.1 | + | 12685 | 0.68 | 0.418509 |
Target: 5'- gGUUGCCUGcggCCuGCUCGCG-GCGCGUa -3' miRNA: 3'- -UAGUGGACua-GG-CGGGCGUuUGCGCG- -5' |
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23125 | 5' | -56.4 | NC_005178.1 | + | 32240 | 0.68 | 0.418509 |
Target: 5'- -cCGCCUGGUcgagCCGaCCGauguAGCGCGCa -3' miRNA: 3'- uaGUGGACUA----GGCgGGCgu--UUGCGCG- -5' |
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23125 | 5' | -56.4 | NC_005178.1 | + | 24605 | 0.68 | 0.408895 |
Target: 5'- gGUCACCaGG-CCGgCCaGCAccuGGCGCGCc -3' miRNA: 3'- -UAGUGGaCUaGGCgGG-CGU---UUGCGCG- -5' |
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23125 | 5' | -56.4 | NC_005178.1 | + | 11965 | 0.68 | 0.390087 |
Target: 5'- cUCGgCUGcaacugCUGUUCGCGGGCGCGCu -3' miRNA: 3'- uAGUgGACua----GGCGGGCGUUUGCGCG- -5' |
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23125 | 5' | -56.4 | NC_005178.1 | + | 12079 | 0.68 | 0.380898 |
Target: 5'- uUCAUCcGAUCCGaacuuUCCGCcAGCGCGUc -3' miRNA: 3'- uAGUGGaCUAGGC-----GGGCGuUUGCGCG- -5' |
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23125 | 5' | -56.4 | NC_005178.1 | + | 6717 | 0.69 | 0.362958 |
Target: 5'- gAUCACCUcuaccggcuGAUgCGCCgCGUAGACGCcgGCc -3' miRNA: 3'- -UAGUGGA---------CUAgGCGG-GCGUUUGCG--CG- -5' |
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23125 | 5' | -56.4 | NC_005178.1 | + | 11586 | 0.69 | 0.362077 |
Target: 5'- uGUC-CUUGAUCUGCCCGCcuugcugGAugGCa- -3' miRNA: 3'- -UAGuGGACUAGGCGGGCG-------UUugCGcg -5' |
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23125 | 5' | -56.4 | NC_005178.1 | + | 28185 | 0.69 | 0.354211 |
Target: 5'- -cCugCUGcgguUCCuCaCCGCGAGCGCGCc -3' miRNA: 3'- uaGugGACu---AGGcG-GGCGUUUGCGCG- -5' |
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23125 | 5' | -56.4 | NC_005178.1 | + | 11079 | 0.69 | 0.353344 |
Target: 5'- --uGCCUGAUCCcgcauccaccucgGCCgGCAGcgcCGCGCu -3' miRNA: 3'- uagUGGACUAGG-------------CGGgCGUUu--GCGCG- -5' |
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23125 | 5' | -56.4 | NC_005178.1 | + | 22390 | 0.69 | 0.345613 |
Target: 5'- aAUCGCCcuGUCCGCCCuGacuGAgGCGCa -3' miRNA: 3'- -UAGUGGacUAGGCGGG-Cgu-UUgCGCG- -5' |
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23125 | 5' | -56.4 | NC_005178.1 | + | 11597 | 0.7 | 0.320727 |
Target: 5'- gAUCgaGCCccGAUUCGCCCGCuucgacacCGCGCa -3' miRNA: 3'- -UAG--UGGa-CUAGGCGGGCGuuu-----GCGCG- -5' |
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23125 | 5' | -56.4 | NC_005178.1 | + | 37233 | 0.71 | 0.274332 |
Target: 5'- uUCGCCUGGaugaccaUCucuaugcaaagCGCCUGCAAAgGCGCu -3' miRNA: 3'- uAGUGGACU-------AG-----------GCGGGCGUUUgCGCG- -5' |
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23125 | 5' | -56.4 | NC_005178.1 | + | 18101 | 0.73 | 0.183653 |
Target: 5'- -gCGCCUGGcCCaGCCCGCcAugGUGCu -3' miRNA: 3'- uaGUGGACUaGG-CGGGCGuUugCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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