miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23126 5' -54.9 NC_005178.1 + 33821 0.66 0.642815
Target:  5'- aGCUuGAAGGUGGCcagcuugGCCuGGCGGUccaugUCg -3'
miRNA:   3'- -CGGuCUUCUACCG-------CGGcCUGCCAa----AG- -5'
23126 5' -54.9 NC_005178.1 + 18061 0.66 0.632604
Target:  5'- aCUGGAcGGUauacGGCGCgGGACGGUa-- -3'
miRNA:   3'- cGGUCUuCUA----CCGCGgCCUGCCAaag -5'
23126 5' -54.9 NC_005178.1 + 27500 0.66 0.621259
Target:  5'- uCCAGggGcgaugGGCGCUGGccaggagcGCGGUg-- -3'
miRNA:   3'- cGGUCuuCua---CCGCGGCC--------UGCCAaag -5'
23126 5' -54.9 NC_005178.1 + 8988 0.66 0.59861
Target:  5'- uGCCGGcgacgcccccGGUGGCGCggCGGACGGc--- -3'
miRNA:   3'- -CGGUCuu--------CUACCGCG--GCCUGCCaaag -5'
23126 5' -54.9 NC_005178.1 + 17530 0.67 0.587326
Target:  5'- gGCCGGcAGcgGGCGCgGGcUGGccgUUCu -3'
miRNA:   3'- -CGGUCuUCuaCCGCGgCCuGCCa--AAG- -5'
23126 5' -54.9 NC_005178.1 + 14675 0.67 0.583948
Target:  5'- cGCCAugGAGGAcGGCgcgaucaucugcugGCCGGAUGGg--- -3'
miRNA:   3'- -CGGU--CUUCUaCCG--------------CGGCCUGCCaaag -5'
23126 5' -54.9 NC_005178.1 + 28033 0.67 0.553749
Target:  5'- cGCCAGGc---GGCGCUGG-CGGUcugUCu -3'
miRNA:   3'- -CGGUCUucuaCCGCGGCCuGCCAa--AG- -5'
23126 5' -54.9 NC_005178.1 + 9360 0.68 0.520766
Target:  5'- cGCCAGcAGucgccagGGCGCCGGccgagGCGGa--- -3'
miRNA:   3'- -CGGUCuUCua-----CCGCGGCC-----UGCCaaag -5'
23126 5' -54.9 NC_005178.1 + 27029 0.68 0.488577
Target:  5'- gGCUAGAucgcuGAgcaGGCuaCGGGCGGUUUg -3'
miRNA:   3'- -CGGUCUu----CUa--CCGcgGCCUGCCAAAg -5'
23126 5' -54.9 NC_005178.1 + 500 0.69 0.467644
Target:  5'- uGCCAGAuucacaagcacGGUGGCGCCGu-CGGUc-- -3'
miRNA:   3'- -CGGUCUu----------CUACCGCGGCcuGCCAaag -5'
23126 5' -54.9 NC_005178.1 + 34180 0.69 0.43814
Target:  5'- gGCCGGAAGGgccggccgugcaucgGGUGCUGGAccuCGGcgUCg -3'
miRNA:   3'- -CGGUCUUCUa--------------CCGCGGCCU---GCCaaAG- -5'
23126 5' -54.9 NC_005178.1 + 25185 0.69 0.42723
Target:  5'- cGCCGGuAGuggccugGGCGgcacguugaCGGGCGGUUUCg -3'
miRNA:   3'- -CGGUCuUCua-----CCGCg--------GCCUGCCAAAG- -5'
23126 5' -54.9 NC_005178.1 + 35596 0.7 0.398315
Target:  5'- cGUCGGaAAGAUucGGCucacggGCCGGACGGUUc- -3'
miRNA:   3'- -CGGUC-UUCUA--CCG------CGGCCUGCCAAag -5'
23126 5' -54.9 NC_005178.1 + 16581 0.71 0.344393
Target:  5'- cGCCAcGAcGAUGGCGCCGG-CGa---- -3'
miRNA:   3'- -CGGU-CUuCUACCGCGGCCuGCcaaag -5'
23126 5' -54.9 NC_005178.1 + 5934 0.72 0.311466
Target:  5'- aGCCAGuuccccAGGUGGC-CUGGACGGg--- -3'
miRNA:   3'- -CGGUCu-----UCUACCGcGGCCUGCCaaag -5'
23126 5' -54.9 NC_005178.1 + 17305 0.73 0.273747
Target:  5'- cGUCAGAuaguGGUuGCGCCGGACGGc--- -3'
miRNA:   3'- -CGGUCUu---CUAcCGCGGCCUGCCaaag -5'
23126 5' -54.9 NC_005178.1 + 19689 1.1 0.000523
Target:  5'- gGCCAGAAGAUGGCGCCGGACGGUUUCc -3'
miRNA:   3'- -CGGUCUUCUACCGCGGCCUGCCAAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.