miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23127 3' -55.1 NC_005178.1 + 4730 0.66 0.628728
Target:  5'- aCCUcCACGUUGCCcg-GCCugguCUGCUUc -3'
miRNA:   3'- -GGAuGUGCAACGGuagCGGc---GACGAG- -5'
23127 3' -55.1 NC_005178.1 + 5173 0.66 0.628728
Target:  5'- gUCUACAgcccCGgagugGCUAUCGCUGacgauCUGCUCg -3'
miRNA:   3'- -GGAUGU----GCaa---CGGUAGCGGC-----GACGAG- -5'
23127 3' -55.1 NC_005178.1 + 6965 0.66 0.617369
Target:  5'- -gUACACGc-GCCAggUGUCGCUGCg- -3'
miRNA:   3'- ggAUGUGCaaCGGUa-GCGGCGACGag -5'
23127 3' -55.1 NC_005178.1 + 28543 0.66 0.617369
Target:  5'- aCUGgGCGgggGCCGUcCGCCGC-GC-Ca -3'
miRNA:   3'- gGAUgUGCaa-CGGUA-GCGGCGaCGaG- -5'
23127 3' -55.1 NC_005178.1 + 22126 0.66 0.617369
Target:  5'- aCCUGCGCaagcugaaGUUcggcgccgaaGCCcgCGCUGCUGC-Cg -3'
miRNA:   3'- -GGAUGUG--------CAA----------CGGuaGCGGCGACGaG- -5'
23127 3' -55.1 NC_005178.1 + 7359 0.66 0.607157
Target:  5'- --gGCGCGUgaCCAUCGCCGCagaugacgcccgccaGCUCc -3'
miRNA:   3'- ggaUGUGCAacGGUAGCGGCGa--------------CGAG- -5'
23127 3' -55.1 NC_005178.1 + 9588 0.66 0.606024
Target:  5'- gCUGCGCuggGCgGUCGCCGCU--UCa -3'
miRNA:   3'- gGAUGUGcaaCGgUAGCGGCGAcgAG- -5'
23127 3' -55.1 NC_005178.1 + 1339 0.66 0.606024
Target:  5'- --gGCGCGUcgGCCAUC-CCGCcuaccaGCUCc -3'
miRNA:   3'- ggaUGUGCAa-CGGUAGcGGCGa-----CGAG- -5'
23127 3' -55.1 NC_005178.1 + 31045 0.66 0.583415
Target:  5'- aUUACGCuGUcugGCCAggcgUCGCCGCcGCUg -3'
miRNA:   3'- gGAUGUG-CAa--CGGU----AGCGGCGaCGAg -5'
23127 3' -55.1 NC_005178.1 + 32818 0.66 0.582289
Target:  5'- aCCUGCACGgcaGUCGUUGgcgaccaUCGCUGCa- -3'
miRNA:   3'- -GGAUGUGCaa-CGGUAGC-------GGCGACGag -5'
23127 3' -55.1 NC_005178.1 + 13027 0.67 0.538787
Target:  5'- aUCUGCAuaccggcgacggUGUUGCCGUCGCUGaucaaUGC-Ca -3'
miRNA:   3'- -GGAUGU------------GCAACGGUAGCGGCg----ACGaG- -5'
23127 3' -55.1 NC_005178.1 + 4007 0.67 0.516901
Target:  5'- gCUGCGCa---CCGUcCGCCGCUGCg- -3'
miRNA:   3'- gGAUGUGcaacGGUA-GCGGCGACGag -5'
23127 3' -55.1 NC_005178.1 + 9041 0.68 0.506092
Target:  5'- aCCUGgaGCaaUGCCG-CGCCGC-GCUCg -3'
miRNA:   3'- -GGAUg-UGcaACGGUaGCGGCGaCGAG- -5'
23127 3' -55.1 NC_005178.1 + 27137 0.68 0.495381
Target:  5'- gCCUGCGgcCGgaaaaUAUCGCCGCcGCUCg -3'
miRNA:   3'- -GGAUGU--GCaacg-GUAGCGGCGaCGAG- -5'
23127 3' -55.1 NC_005178.1 + 28946 0.69 0.423608
Target:  5'- uCCgGCACG--GCCAUCGCCG-UGCg- -3'
miRNA:   3'- -GGaUGUGCaaCGGUAGCGGCgACGag -5'
23127 3' -55.1 NC_005178.1 + 31899 0.69 0.413868
Target:  5'- cCCUGCugGgauggcUUGCCAUCGgCGUucagGUUCg -3'
miRNA:   3'- -GGAUGugC------AACGGUAGCgGCGa---CGAG- -5'
23127 3' -55.1 NC_005178.1 + 30097 0.7 0.385492
Target:  5'- aCCUGCACGUcGaaAUCGCUGCcGgUCa -3'
miRNA:   3'- -GGAUGUGCAaCggUAGCGGCGaCgAG- -5'
23127 3' -55.1 NC_005178.1 + 23468 0.71 0.316362
Target:  5'- cCCgGCGCGaaGCCggC-CCGCUGCUCg -3'
miRNA:   3'- -GGaUGUGCaaCGGuaGcGGCGACGAG- -5'
23127 3' -55.1 NC_005178.1 + 7275 0.75 0.190622
Target:  5'- gCCgcaGCACGcUGCCGcCGCCGCUGUa- -3'
miRNA:   3'- -GGa--UGUGCaACGGUaGCGGCGACGag -5'
23127 3' -55.1 NC_005178.1 + 19787 1.11 0.000426
Target:  5'- gCCUACACGUUGCCAUCGCCGCUGCUCu -3'
miRNA:   3'- -GGAUGUGCAACGGUAGCGGCGACGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.