Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23127 | 3' | -55.1 | NC_005178.1 | + | 4730 | 0.66 | 0.628728 |
Target: 5'- aCCUcCACGUUGCCcg-GCCugguCUGCUUc -3' miRNA: 3'- -GGAuGUGCAACGGuagCGGc---GACGAG- -5' |
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23127 | 3' | -55.1 | NC_005178.1 | + | 5173 | 0.66 | 0.628728 |
Target: 5'- gUCUACAgcccCGgagugGCUAUCGCUGacgauCUGCUCg -3' miRNA: 3'- -GGAUGU----GCaa---CGGUAGCGGC-----GACGAG- -5' |
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23127 | 3' | -55.1 | NC_005178.1 | + | 6965 | 0.66 | 0.617369 |
Target: 5'- -gUACACGc-GCCAggUGUCGCUGCg- -3' miRNA: 3'- ggAUGUGCaaCGGUa-GCGGCGACGag -5' |
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23127 | 3' | -55.1 | NC_005178.1 | + | 28543 | 0.66 | 0.617369 |
Target: 5'- aCUGgGCGgggGCCGUcCGCCGC-GC-Ca -3' miRNA: 3'- gGAUgUGCaa-CGGUA-GCGGCGaCGaG- -5' |
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23127 | 3' | -55.1 | NC_005178.1 | + | 22126 | 0.66 | 0.617369 |
Target: 5'- aCCUGCGCaagcugaaGUUcggcgccgaaGCCcgCGCUGCUGC-Cg -3' miRNA: 3'- -GGAUGUG--------CAA----------CGGuaGCGGCGACGaG- -5' |
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23127 | 3' | -55.1 | NC_005178.1 | + | 7359 | 0.66 | 0.607157 |
Target: 5'- --gGCGCGUgaCCAUCGCCGCagaugacgcccgccaGCUCc -3' miRNA: 3'- ggaUGUGCAacGGUAGCGGCGa--------------CGAG- -5' |
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23127 | 3' | -55.1 | NC_005178.1 | + | 9588 | 0.66 | 0.606024 |
Target: 5'- gCUGCGCuggGCgGUCGCCGCU--UCa -3' miRNA: 3'- gGAUGUGcaaCGgUAGCGGCGAcgAG- -5' |
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23127 | 3' | -55.1 | NC_005178.1 | + | 1339 | 0.66 | 0.606024 |
Target: 5'- --gGCGCGUcgGCCAUC-CCGCcuaccaGCUCc -3' miRNA: 3'- ggaUGUGCAa-CGGUAGcGGCGa-----CGAG- -5' |
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23127 | 3' | -55.1 | NC_005178.1 | + | 31045 | 0.66 | 0.583415 |
Target: 5'- aUUACGCuGUcugGCCAggcgUCGCCGCcGCUg -3' miRNA: 3'- gGAUGUG-CAa--CGGU----AGCGGCGaCGAg -5' |
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23127 | 3' | -55.1 | NC_005178.1 | + | 32818 | 0.66 | 0.582289 |
Target: 5'- aCCUGCACGgcaGUCGUUGgcgaccaUCGCUGCa- -3' miRNA: 3'- -GGAUGUGCaa-CGGUAGC-------GGCGACGag -5' |
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23127 | 3' | -55.1 | NC_005178.1 | + | 13027 | 0.67 | 0.538787 |
Target: 5'- aUCUGCAuaccggcgacggUGUUGCCGUCGCUGaucaaUGC-Ca -3' miRNA: 3'- -GGAUGU------------GCAACGGUAGCGGCg----ACGaG- -5' |
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23127 | 3' | -55.1 | NC_005178.1 | + | 4007 | 0.67 | 0.516901 |
Target: 5'- gCUGCGCa---CCGUcCGCCGCUGCg- -3' miRNA: 3'- gGAUGUGcaacGGUA-GCGGCGACGag -5' |
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23127 | 3' | -55.1 | NC_005178.1 | + | 9041 | 0.68 | 0.506092 |
Target: 5'- aCCUGgaGCaaUGCCG-CGCCGC-GCUCg -3' miRNA: 3'- -GGAUg-UGcaACGGUaGCGGCGaCGAG- -5' |
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23127 | 3' | -55.1 | NC_005178.1 | + | 27137 | 0.68 | 0.495381 |
Target: 5'- gCCUGCGgcCGgaaaaUAUCGCCGCcGCUCg -3' miRNA: 3'- -GGAUGU--GCaacg-GUAGCGGCGaCGAG- -5' |
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23127 | 3' | -55.1 | NC_005178.1 | + | 28946 | 0.69 | 0.423608 |
Target: 5'- uCCgGCACG--GCCAUCGCCG-UGCg- -3' miRNA: 3'- -GGaUGUGCaaCGGUAGCGGCgACGag -5' |
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23127 | 3' | -55.1 | NC_005178.1 | + | 31899 | 0.69 | 0.413868 |
Target: 5'- cCCUGCugGgauggcUUGCCAUCGgCGUucagGUUCg -3' miRNA: 3'- -GGAUGugC------AACGGUAGCgGCGa---CGAG- -5' |
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23127 | 3' | -55.1 | NC_005178.1 | + | 30097 | 0.7 | 0.385492 |
Target: 5'- aCCUGCACGUcGaaAUCGCUGCcGgUCa -3' miRNA: 3'- -GGAUGUGCAaCggUAGCGGCGaCgAG- -5' |
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23127 | 3' | -55.1 | NC_005178.1 | + | 23468 | 0.71 | 0.316362 |
Target: 5'- cCCgGCGCGaaGCCggC-CCGCUGCUCg -3' miRNA: 3'- -GGaUGUGCaaCGGuaGcGGCGACGAG- -5' |
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23127 | 3' | -55.1 | NC_005178.1 | + | 7275 | 0.75 | 0.190622 |
Target: 5'- gCCgcaGCACGcUGCCGcCGCCGCUGUa- -3' miRNA: 3'- -GGa--UGUGCaACGGUaGCGGCGACGag -5' |
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23127 | 3' | -55.1 | NC_005178.1 | + | 19787 | 1.11 | 0.000426 |
Target: 5'- gCCUACACGUUGCCAUCGCCGCUGCUCu -3' miRNA: 3'- -GGAUGUGCAACGGUAGCGGCGACGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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