Results 1 - 20 of 43 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23127 | 5' | -59 | NC_005178.1 | + | 33084 | 0.66 | 0.439603 |
Target: 5'- gCUggGCgGGAGcGGuCGGCAGgGugaagaCCUGGg -3' miRNA: 3'- -GGuuCGaCCUC-CU-GCCGUCgC------GGACC- -5' |
|||||||
23127 | 5' | -59 | NC_005178.1 | + | 13368 | 0.66 | 0.439603 |
Target: 5'- cCCcGGCUGGAGGAUGGUcuugacCGCUUu- -3' miRNA: 3'- -GGuUCGACCUCCUGCCGuc----GCGGAcc -5' |
|||||||
23127 | 5' | -59 | NC_005178.1 | + | 26705 | 0.66 | 0.439603 |
Target: 5'- aCCGuuGCcGG-GG-UGGCcaagGGCGCCUGGg -3' miRNA: 3'- -GGUu-CGaCCuCCuGCCG----UCGCGGACC- -5' |
|||||||
23127 | 5' | -59 | NC_005178.1 | + | 31230 | 0.66 | 0.438634 |
Target: 5'- cCCGGaCUGGGGcGACaGCaucgucgAGCGCCUGa -3' miRNA: 3'- -GGUUcGACCUC-CUGcCG-------UCGCGGACc -5' |
|||||||
23127 | 5' | -59 | NC_005178.1 | + | 8721 | 0.66 | 0.429967 |
Target: 5'- aCCAGGUucUGGuGGuucgUGGCGGUGCCg-- -3' miRNA: 3'- -GGUUCG--ACCuCCu---GCCGUCGCGGacc -5' |
|||||||
23127 | 5' | -59 | NC_005178.1 | + | 30249 | 0.66 | 0.429967 |
Target: 5'- cCCAugcGCUGGAgcagccGGGCGGCGucguugaagguGCGCaggcuCUGGg -3' miRNA: 3'- -GGUu--CGACCU------CCUGCCGU-----------CGCG-----GACC- -5' |
|||||||
23127 | 5' | -59 | NC_005178.1 | + | 37055 | 0.66 | 0.429967 |
Target: 5'- gCCGGcucGCUGGAcGaGGCGGCAGCacuCgCUGGc -3' miRNA: 3'- -GGUU---CGACCU-C-CUGCCGUCGc--G-GACC- -5' |
|||||||
23127 | 5' | -59 | NC_005178.1 | + | 18081 | 0.66 | 0.429967 |
Target: 5'- --cAGCUGGcGaaccuGCcGCAGCGCCUGGc -3' miRNA: 3'- gguUCGACCuCc----UGcCGUCGCGGACC- -5' |
|||||||
23127 | 5' | -59 | NC_005178.1 | + | 28680 | 0.66 | 0.42901 |
Target: 5'- aCCGGGCgaUGGAgcccagguuucgcGGuCGGUGGCGUCgGGg -3' miRNA: 3'- -GGUUCG--ACCU-------------CCuGCCGUCGCGGaCC- -5' |
|||||||
23127 | 5' | -59 | NC_005178.1 | + | 12081 | 0.66 | 0.420455 |
Target: 5'- aCCAGcGcCUGGuGGAguggucgcgUGGCGG-GCCUGGc -3' miRNA: 3'- -GGUU-C-GACCuCCU---------GCCGUCgCGGACC- -5' |
|||||||
23127 | 5' | -59 | NC_005178.1 | + | 32829 | 0.66 | 0.411072 |
Target: 5'- gCCGGGCaacgUGGAGGuACGcGaCAGCGCUUu- -3' miRNA: 3'- -GGUUCG----ACCUCC-UGC-C-GUCGCGGAcc -5' |
|||||||
23127 | 5' | -59 | NC_005178.1 | + | 14079 | 0.66 | 0.401821 |
Target: 5'- gCCGAGCaGcGGGcCGGCuucGCGCCgGGc -3' miRNA: 3'- -GGUUCGaCcUCCuGCCGu--CGCGGaCC- -5' |
|||||||
23127 | 5' | -59 | NC_005178.1 | + | 26763 | 0.66 | 0.401821 |
Target: 5'- gCUggGCUcGGccAGGAUGGCGGCGgCg-- -3' miRNA: 3'- -GGuuCGA-CC--UCCUGCCGUCGCgGacc -5' |
|||||||
23127 | 5' | -59 | NC_005178.1 | + | 2980 | 0.66 | 0.401821 |
Target: 5'- cCCGAGCgc--GGAUGGCuGCcgagcgugcgcaGCCUGGa -3' miRNA: 3'- -GGUUCGaccuCCUGCCGuCG------------CGGACC- -5' |
|||||||
23127 | 5' | -59 | NC_005178.1 | + | 28317 | 0.66 | 0.400903 |
Target: 5'- gCCGcuggaguGGCUGGuGG-CGGgAGUGgCUGGu -3' miRNA: 3'- -GGU-------UCGACCuCCuGCCgUCGCgGACC- -5' |
|||||||
23127 | 5' | -59 | NC_005178.1 | + | 10274 | 0.66 | 0.398157 |
Target: 5'- gCCAcGCUGGuGGuagucgagcagcuCGGCGGCacguCCUGGc -3' miRNA: 3'- -GGUuCGACCuCCu------------GCCGUCGc---GGACC- -5' |
|||||||
23127 | 5' | -59 | NC_005178.1 | + | 35157 | 0.66 | 0.389993 |
Target: 5'- gCCAgccGGCUGGAGGACgucacugucggccaGGCcGCaGUCgUGGa -3' miRNA: 3'- -GGU---UCGACCUCCUG--------------CCGuCG-CGG-ACC- -5' |
|||||||
23127 | 5' | -59 | NC_005178.1 | + | 21001 | 0.67 | 0.383719 |
Target: 5'- aCCGGGUUcgccGuGGGCGGCAGCaccgccaccgGCCUGa -3' miRNA: 3'- -GGUUCGAc---CuCCUGCCGUCG----------CGGACc -5' |
|||||||
23127 | 5' | -59 | NC_005178.1 | + | 28124 | 0.67 | 0.374874 |
Target: 5'- cCUggGCggUGGcaccGAUGGCGGCGCCcagGGg -3' miRNA: 3'- -GGuuCG--ACCuc--CUGCCGUCGCGGa--CC- -5' |
|||||||
23127 | 5' | -59 | NC_005178.1 | + | 13115 | 0.67 | 0.374874 |
Target: 5'- gCCAccGCuaUGGAGGuGCucCAGCGCCUGGc -3' miRNA: 3'- -GGUu-CG--ACCUCC-UGccGUCGCGGACC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home