miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23127 5' -59 NC_005178.1 + 26705 0.66 0.439603
Target:  5'- aCCGuuGCcGG-GG-UGGCcaagGGCGCCUGGg -3'
miRNA:   3'- -GGUu-CGaCCuCCuGCCG----UCGCGGACC- -5'
23127 5' -59 NC_005178.1 + 33084 0.66 0.439603
Target:  5'- gCUggGCgGGAGcGGuCGGCAGgGugaagaCCUGGg -3'
miRNA:   3'- -GGuuCGaCCUC-CU-GCCGUCgC------GGACC- -5'
23127 5' -59 NC_005178.1 + 13368 0.66 0.439603
Target:  5'- cCCcGGCUGGAGGAUGGUcuugacCGCUUu- -3'
miRNA:   3'- -GGuUCGACCUCCUGCCGuc----GCGGAcc -5'
23127 5' -59 NC_005178.1 + 31230 0.66 0.438634
Target:  5'- cCCGGaCUGGGGcGACaGCaucgucgAGCGCCUGa -3'
miRNA:   3'- -GGUUcGACCUC-CUGcCG-------UCGCGGACc -5'
23127 5' -59 NC_005178.1 + 8721 0.66 0.429967
Target:  5'- aCCAGGUucUGGuGGuucgUGGCGGUGCCg-- -3'
miRNA:   3'- -GGUUCG--ACCuCCu---GCCGUCGCGGacc -5'
23127 5' -59 NC_005178.1 + 30249 0.66 0.429967
Target:  5'- cCCAugcGCUGGAgcagccGGGCGGCGucguugaagguGCGCaggcuCUGGg -3'
miRNA:   3'- -GGUu--CGACCU------CCUGCCGU-----------CGCG-----GACC- -5'
23127 5' -59 NC_005178.1 + 37055 0.66 0.429967
Target:  5'- gCCGGcucGCUGGAcGaGGCGGCAGCacuCgCUGGc -3'
miRNA:   3'- -GGUU---CGACCU-C-CUGCCGUCGc--G-GACC- -5'
23127 5' -59 NC_005178.1 + 18081 0.66 0.429967
Target:  5'- --cAGCUGGcGaaccuGCcGCAGCGCCUGGc -3'
miRNA:   3'- gguUCGACCuCc----UGcCGUCGCGGACC- -5'
23127 5' -59 NC_005178.1 + 28680 0.66 0.42901
Target:  5'- aCCGGGCgaUGGAgcccagguuucgcGGuCGGUGGCGUCgGGg -3'
miRNA:   3'- -GGUUCG--ACCU-------------CCuGCCGUCGCGGaCC- -5'
23127 5' -59 NC_005178.1 + 12081 0.66 0.420455
Target:  5'- aCCAGcGcCUGGuGGAguggucgcgUGGCGG-GCCUGGc -3'
miRNA:   3'- -GGUU-C-GACCuCCU---------GCCGUCgCGGACC- -5'
23127 5' -59 NC_005178.1 + 32829 0.66 0.411072
Target:  5'- gCCGGGCaacgUGGAGGuACGcGaCAGCGCUUu- -3'
miRNA:   3'- -GGUUCG----ACCUCC-UGC-C-GUCGCGGAcc -5'
23127 5' -59 NC_005178.1 + 26763 0.66 0.401821
Target:  5'- gCUggGCUcGGccAGGAUGGCGGCGgCg-- -3'
miRNA:   3'- -GGuuCGA-CC--UCCUGCCGUCGCgGacc -5'
23127 5' -59 NC_005178.1 + 14079 0.66 0.401821
Target:  5'- gCCGAGCaGcGGGcCGGCuucGCGCCgGGc -3'
miRNA:   3'- -GGUUCGaCcUCCuGCCGu--CGCGGaCC- -5'
23127 5' -59 NC_005178.1 + 2980 0.66 0.401821
Target:  5'- cCCGAGCgc--GGAUGGCuGCcgagcgugcgcaGCCUGGa -3'
miRNA:   3'- -GGUUCGaccuCCUGCCGuCG------------CGGACC- -5'
23127 5' -59 NC_005178.1 + 28317 0.66 0.400903
Target:  5'- gCCGcuggaguGGCUGGuGG-CGGgAGUGgCUGGu -3'
miRNA:   3'- -GGU-------UCGACCuCCuGCCgUCGCgGACC- -5'
23127 5' -59 NC_005178.1 + 10274 0.66 0.398157
Target:  5'- gCCAcGCUGGuGGuagucgagcagcuCGGCGGCacguCCUGGc -3'
miRNA:   3'- -GGUuCGACCuCCu------------GCCGUCGc---GGACC- -5'
23127 5' -59 NC_005178.1 + 35157 0.66 0.389993
Target:  5'- gCCAgccGGCUGGAGGACgucacugucggccaGGCcGCaGUCgUGGa -3'
miRNA:   3'- -GGU---UCGACCUCCUG--------------CCGuCG-CGG-ACC- -5'
23127 5' -59 NC_005178.1 + 21001 0.67 0.383719
Target:  5'- aCCGGGUUcgccGuGGGCGGCAGCaccgccaccgGCCUGa -3'
miRNA:   3'- -GGUUCGAc---CuCCUGCCGUCG----------CGGACc -5'
23127 5' -59 NC_005178.1 + 13115 0.67 0.374874
Target:  5'- gCCAccGCuaUGGAGGuGCucCAGCGCCUGGc -3'
miRNA:   3'- -GGUu-CG--ACCUCC-UGccGUCGCGGACC- -5'
23127 5' -59 NC_005178.1 + 28124 0.67 0.374874
Target:  5'- cCUggGCggUGGcaccGAUGGCGGCGCCcagGGg -3'
miRNA:   3'- -GGuuCG--ACCuc--CUGCCGUCGCGGa--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.