miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23128 5' -60.3 NC_005178.1 + 20031 1.09 0.000203
Target:  5'- cGCCCGCUGCCGGCCGUUUCCUGGACUu -3'
miRNA:   3'- -CGGGCGACGGCCGGCAAAGGACCUGA- -5'
23128 5' -60.3 NC_005178.1 + 23482 0.73 0.106215
Target:  5'- gGCCCGCUGCuCGGCCGgcugcUCaaGGcACUg -3'
miRNA:   3'- -CGGGCGACG-GCCGGCaa---AGgaCC-UGA- -5'
23128 5' -60.3 NC_005178.1 + 16654 0.73 0.112669
Target:  5'- uCCCGCUGCCaGCCaauggcgaggcggUCCUGGGCg -3'
miRNA:   3'- cGGGCGACGGcCGGcaa----------AGGACCUGa -5'
23128 5' -60.3 NC_005178.1 + 2716 0.72 0.136538
Target:  5'- cGCCgCGCUGCUGaacGCCGc--CCUGGGCg -3'
miRNA:   3'- -CGG-GCGACGGC---CGGCaaaGGACCUGa -5'
23128 5' -60.3 NC_005178.1 + 9022 0.71 0.156652
Target:  5'- cGCgCCGUUGCCGGCUucgaCCUGGAg- -3'
miRNA:   3'- -CG-GGCGACGGCCGGcaaaGGACCUga -5'
23128 5' -60.3 NC_005178.1 + 12162 0.7 0.194434
Target:  5'- cGCCUGCUgGUCGGCUGUcUCCcccaaaccGGACa -3'
miRNA:   3'- -CGGGCGA-CGGCCGGCAaAGGa-------CCUGa -5'
23128 5' -60.3 NC_005178.1 + 34180 0.69 0.210547
Target:  5'- gGCCgGaaggGCCGGCCGUgcaucgggUgCUGGACc -3'
miRNA:   3'- -CGGgCga--CGGCCGGCAa-------AgGACCUGa -5'
23128 5' -60.3 NC_005178.1 + 25176 0.69 0.216169
Target:  5'- aGCCaagGCcGCCGGuaGUggCCUGGGCg -3'
miRNA:   3'- -CGGg--CGaCGGCCggCAaaGGACCUGa -5'
23128 5' -60.3 NC_005178.1 + 11908 0.69 0.216169
Target:  5'- gGCCUGCUGCCGGUCGaa--CUcGGCg -3'
miRNA:   3'- -CGGGCGACGGCCGGCaaagGAcCUGa -5'
23128 5' -60.3 NC_005178.1 + 33928 0.69 0.227798
Target:  5'- cGgCCGgUGCCGGCU--UUCCgGGGCg -3'
miRNA:   3'- -CgGGCgACGGCCGGcaAAGGaCCUGa -5'
23128 5' -60.3 NC_005178.1 + 22158 0.68 0.24623
Target:  5'- cGCgCUGCUGCCGGUuaCGgcUUCUGGcaGCUg -3'
miRNA:   3'- -CG-GGCGACGGCCG--GCaaAGGACC--UGA- -5'
23128 5' -60.3 NC_005178.1 + 6772 0.68 0.252643
Target:  5'- -aCCGCUGCCaGGCgGaugUCCUGGuucaGCUc -3'
miRNA:   3'- cgGGCGACGG-CCGgCaa-AGGACC----UGA- -5'
23128 5' -60.3 NC_005178.1 + 14090 0.68 0.259193
Target:  5'- gGCCgGCUucgcgccgggcGCCcuGGCCGUcgcCCUGGGCg -3'
miRNA:   3'- -CGGgCGA-----------CGG--CCGGCAaa-GGACCUGa -5'
23128 5' -60.3 NC_005178.1 + 18847 0.68 0.259193
Target:  5'- cGUgCGCUuggcuugaGCUGGCCGUUUCUgaGGACc -3'
miRNA:   3'- -CGgGCGA--------CGGCCGGCAAAGGa-CCUGa -5'
23128 5' -60.3 NC_005178.1 + 23258 0.68 0.272708
Target:  5'- aUCCGCUuGCCGgaGCCGaagaCCUGGACc -3'
miRNA:   3'- cGGGCGA-CGGC--CGGCaaa-GGACCUGa -5'
23128 5' -60.3 NC_005178.1 + 15280 0.68 0.272708
Target:  5'- cGCCCGCcGCCuGGCgGgccagCCUGG-Cg -3'
miRNA:   3'- -CGGGCGaCGG-CCGgCaaa--GGACCuGa -5'
23128 5' -60.3 NC_005178.1 + 13017 0.67 0.284635
Target:  5'- aGCCCGCcgugaaggugcagcUGCUGGCCag--CCUGGcCg -3'
miRNA:   3'- -CGGGCG--------------ACGGCCGGcaaaGGACCuGa -5'
23128 5' -60.3 NC_005178.1 + 32617 0.67 0.286783
Target:  5'- cGgCCGCUGgCGGCCagUUCCUcGGCg -3'
miRNA:   3'- -CgGGCGACgGCCGGcaAAGGAcCUGa -5'
23128 5' -60.3 NC_005178.1 + 12308 0.67 0.286783
Target:  5'- uCgCGCUGCCuGCCGcUUUCCUGcuGGCg -3'
miRNA:   3'- cGgGCGACGGcCGGC-AAAGGAC--CUGa -5'
23128 5' -60.3 NC_005178.1 + 6089 0.67 0.301423
Target:  5'- uGUUCaGCgaGCCGGCCGccagcggUUCCUGGAg- -3'
miRNA:   3'- -CGGG-CGa-CGGCCGGCa------AAGGACCUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.