miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23130 5' -63.1 NC_005178.1 + 13847 0.66 0.246204
Target:  5'- aGGCCgaggucgcAGGUUucgaccccgacccgaAGGCCag-CGCCGCCCg -3'
miRNA:   3'- cCCGG--------UCCGG---------------UUCGGguaGCGGCGGG- -5'
23130 5' -63.1 NC_005178.1 + 2577 0.66 0.243725
Target:  5'- uGGCCGGGCU---UCCAggGCUGCCg -3'
miRNA:   3'- cCCGGUCCGGuucGGGUagCGGCGGg -5'
23130 5' -63.1 NC_005178.1 + 10725 0.66 0.241879
Target:  5'- cGGGCCGaagacagccccgcuGGCCAcAGCgCGUCccggcuggaagGCCuGCCCc -3'
miRNA:   3'- -CCCGGU--------------CCGGU-UCGgGUAG-----------CGG-CGGG- -5'
23130 5' -63.1 NC_005178.1 + 13406 0.66 0.237617
Target:  5'- cGGCgGGGaguaCCucGCCCGUCacggagcccGCCGCCUu -3'
miRNA:   3'- cCCGgUCC----GGuuCGGGUAG---------CGGCGGG- -5'
23130 5' -63.1 NC_005178.1 + 35561 0.66 0.237617
Target:  5'- uGGCCAGGCCGaccAGCUgAUCGauaccaCGgUCg -3'
miRNA:   3'- cCCGGUCCGGU---UCGGgUAGCg-----GCgGG- -5'
23130 5' -63.1 NC_005178.1 + 36178 0.66 0.237617
Target:  5'- cGGGCCAuGuUCAAGCCC-UCGCuuCGUCUu -3'
miRNA:   3'- -CCCGGUcC-GGUUCGGGuAGCG--GCGGG- -5'
23130 5' -63.1 NC_005178.1 + 37507 0.66 0.237617
Target:  5'- -uGCUauagGGGCUcuAGCCUAUC-CCGCCCu -3'
miRNA:   3'- ccCGG----UCCGGu-UCGGGUAGcGGCGGG- -5'
23130 5' -63.1 NC_005178.1 + 21090 0.67 0.231638
Target:  5'- uGGcGCCaAGGUC--GUCCGUgugCGCCGCCUg -3'
miRNA:   3'- -CC-CGG-UCCGGuuCGGGUA---GCGGCGGG- -5'
23130 5' -63.1 NC_005178.1 + 4659 0.67 0.231638
Target:  5'- uGGCCAauGGCauGGCCgaCAUCGCCaacaucGCCCu -3'
miRNA:   3'- cCCGGU--CCGguUCGG--GUAGCGG------CGGG- -5'
23130 5' -63.1 NC_005178.1 + 6382 0.67 0.231638
Target:  5'- --aCCAGGaCCAGGUCCG--GCuCGCCCa -3'
miRNA:   3'- cccGGUCC-GGUUCGGGUagCG-GCGGG- -5'
23130 5' -63.1 NC_005178.1 + 21351 0.67 0.231638
Target:  5'- cGGCauGGCCgAGGCCgGUCaCCGCUCg -3'
miRNA:   3'- cCCGguCCGG-UUCGGgUAGcGGCGGG- -5'
23130 5' -63.1 NC_005178.1 + 17870 0.67 0.231638
Target:  5'- cGGcGCCAucuucuGGCCAAGCCC-UgGCaCGCg- -3'
miRNA:   3'- -CC-CGGU------CCGGUUCGGGuAgCG-GCGgg -5'
23130 5' -63.1 NC_005178.1 + 2148 0.67 0.225786
Target:  5'- cGGCCAGcGCCGGGgCCAgu-UgGCCCu -3'
miRNA:   3'- cCCGGUC-CGGUUCgGGUagcGgCGGG- -5'
23130 5' -63.1 NC_005178.1 + 24884 0.67 0.225786
Target:  5'- aGGcaaCCAGGCCAcccGCCagcgCGCCGgCCg -3'
miRNA:   3'- -CCc--GGUCCGGUu--CGGgua-GCGGCgGG- -5'
23130 5' -63.1 NC_005178.1 + 10326 0.67 0.225208
Target:  5'- aGGGCCGGGCgCGGaggggcgaagcgcGCCgGgcugCGCUGgCCg -3'
miRNA:   3'- -CCCGGUCCG-GUU-------------CGGgUa---GCGGCgGG- -5'
23130 5' -63.1 NC_005178.1 + 8461 0.67 0.223481
Target:  5'- -cGCCAGGCgGgauuGCuCCAggauugaacgccgUGCCGCCCa -3'
miRNA:   3'- ccCGGUCCGgUu---CG-GGUa------------GCGGCGGG- -5'
23130 5' -63.1 NC_005178.1 + 16560 0.67 0.22006
Target:  5'- cGGGCCGaccuGGCCGccauGGCaacguCAUUaCCGCCCc -3'
miRNA:   3'- -CCCGGU----CCGGU----UCGg----GUAGcGGCGGG- -5'
23130 5' -63.1 NC_005178.1 + 9815 0.67 0.22006
Target:  5'- uGGCUc-GCCAGGUCCAggCGCUGCUg -3'
miRNA:   3'- cCCGGucCGGUUCGGGUa-GCGGCGGg -5'
23130 5' -63.1 NC_005178.1 + 36322 0.67 0.214459
Target:  5'- cGGGCCAgagcuucacagGGCuCAGGUCCAgCGCgGCg- -3'
miRNA:   3'- -CCCGGU-----------CCG-GUUCGGGUaGCGgCGgg -5'
23130 5' -63.1 NC_005178.1 + 33831 0.67 0.214459
Target:  5'- uGGCCAgcuuGGCCuggcGGUCCAugUCGgCGCCg -3'
miRNA:   3'- cCCGGU----CCGGu---UCGGGU--AGCgGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.