miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23131 3' -55.3 NC_005178.1 + 9685 0.7 0.355107
Target:  5'- gCCCUGGgcGGCCug-GAGGucGGCGUa -3'
miRNA:   3'- -GGGACUuuCCGGucaUUCCu-CCGCGa -5'
23131 3' -55.3 NC_005178.1 + 9925 0.73 0.234654
Target:  5'- aCCCUGGAGGGCCAGcgcauccuguUGuugcuGGAGcGCGUc -3'
miRNA:   3'- -GGGACUUUCCGGUC----------AUu----CCUC-CGCGa -5'
23131 3' -55.3 NC_005178.1 + 10309 0.71 0.305363
Target:  5'- gUCCUGGcggauagccgAGGGCCGGgcGcGGAGGgGCg -3'
miRNA:   3'- -GGGACU----------UUCCGGUCauU-CCUCCgCGa -5'
23131 3' -55.3 NC_005178.1 + 11889 0.67 0.545945
Target:  5'- gCCC----AGGCC-GUGcGGGAGGUGCUg -3'
miRNA:   3'- -GGGacuuUCCGGuCAU-UCCUCCGCGA- -5'
23131 3' -55.3 NC_005178.1 + 12270 0.68 0.449916
Target:  5'- aCCCUGcuGAAGGUCAGcgcGGAuGCGCa -3'
miRNA:   3'- -GGGAC--UUUCCGGUCauuCCUcCGCGa -5'
23131 3' -55.3 NC_005178.1 + 14307 0.66 0.588527
Target:  5'- gUCCUG-AAGGCCGGgcaccucGGCGCg -3'
miRNA:   3'- -GGGACuUUCCGGUCauuccu-CCGCGa -5'
23131 3' -55.3 NC_005178.1 + 15344 0.66 0.579499
Target:  5'- gCCCUGguAGGCCGGcAAGGGaccaccaguucuGGUGg- -3'
miRNA:   3'- -GGGACuuUCCGGUCaUUCCU------------CCGCga -5'
23131 3' -55.3 NC_005178.1 + 17278 0.69 0.382036
Target:  5'- aUCCUGGAggccaaAGGCUGGU--GGGGGCGUc -3'
miRNA:   3'- -GGGACUU------UCCGGUCAuuCCUCCGCGa -5'
23131 3' -55.3 NC_005178.1 + 20861 1.11 0.00043
Target:  5'- aCCCUGAAAGGCCAGUAAGGAGGCGCUa -3'
miRNA:   3'- -GGGACUUUCCGGUCAUUCCUCCGCGA- -5'
23131 3' -55.3 NC_005178.1 + 21017 0.74 0.21046
Target:  5'- uCCUUGAggucgAAGaCCAGgcGGGGGGCGCg -3'
miRNA:   3'- -GGGACU-----UUCcGGUCauUCCUCCGCGa -5'
23131 3' -55.3 NC_005178.1 + 25505 0.66 0.557068
Target:  5'- aCCagGAAcaGGGCCAGggccAAGccGAGGCGCc -3'
miRNA:   3'- gGGa-CUU--UCCGGUCa---UUC--CUCCGCGa -5'
23131 3' -55.3 NC_005178.1 + 27400 0.7 0.363933
Target:  5'- gCCUaUGAGGGGgaaauCCAGgcgcuGGAGGCGCUg -3'
miRNA:   3'- -GGG-ACUUUCC-----GGUCauu--CCUCCGCGA- -5'
23131 3' -55.3 NC_005178.1 + 27473 0.66 0.587397
Target:  5'- gCCUGGaccagaagaucgccGAGGCCAGgaacaacauGGucaAGGCGCa -3'
miRNA:   3'- gGGACU--------------UUCCGGUCauu------CC---UCCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.