miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23131 5' -59.3 NC_005178.1 + 20472 0.67 0.333097
Target:  5'- aGAUCGCCG-CCGCcacCGCCCaGCUg -3'
miRNA:   3'- aCUGGUGGCuGGCGuu-GUGGGgCGAg -5'
23131 5' -59.3 NC_005178.1 + 3764 0.67 0.325067
Target:  5'- gGGCCAUCG-CCaaggGCGGCACCaugCCGCUg -3'
miRNA:   3'- aCUGGUGGCuGG----CGUUGUGG---GGCGAg -5'
23131 5' -59.3 NC_005178.1 + 23096 0.67 0.317183
Target:  5'- cUGGCC-CUGACCaGCuccgGCACCCCGg-- -3'
miRNA:   3'- -ACUGGuGGCUGG-CGu---UGUGGGGCgag -5'
23131 5' -59.3 NC_005178.1 + 11952 0.67 0.317183
Target:  5'- cGGCCGCucguugcuCGGCUGCAACugCUguucgcgggcgCGCUCg -3'
miRNA:   3'- aCUGGUG--------GCUGGCGUUGugGG-----------GCGAG- -5'
23131 5' -59.3 NC_005178.1 + 4466 0.67 0.317183
Target:  5'- -cACCcuGCCGACCGCuccCGCCCagCGCUa -3'
miRNA:   3'- acUGG--UGGCUGGCGuu-GUGGG--GCGAg -5'
23131 5' -59.3 NC_005178.1 + 4501 0.68 0.309444
Target:  5'- uUGGCCACCuGCCGgAAUGCCCuCGgUg -3'
miRNA:   3'- -ACUGGUGGcUGGCgUUGUGGG-GCgAg -5'
23131 5' -59.3 NC_005178.1 + 28132 0.68 0.294398
Target:  5'- gUGG-CACCGAUgGCGGCGCCCagggGCUg -3'
miRNA:   3'- -ACUgGUGGCUGgCGUUGUGGGg---CGAg -5'
23131 5' -59.3 NC_005178.1 + 14102 0.68 0.294398
Target:  5'- cGuACuCACCGGCCGCAAgcauUACCCC-CUg -3'
miRNA:   3'- aC-UG-GUGGCUGGCGUU----GUGGGGcGAg -5'
23131 5' -59.3 NC_005178.1 + 4791 0.68 0.294398
Target:  5'- cGGCCGCCugGAUCGCcaauCGCCgCCGCg- -3'
miRNA:   3'- aCUGGUGG--CUGGCGuu--GUGG-GGCGag -5'
23131 5' -59.3 NC_005178.1 + 27971 0.68 0.287092
Target:  5'- cGACCGCCcAgCGCAgcgcggcgcaggGCAUCgCGCUCg -3'
miRNA:   3'- aCUGGUGGcUgGCGU------------UGUGGgGCGAG- -5'
23131 5' -59.3 NC_005178.1 + 9661 0.68 0.284928
Target:  5'- cGGCCgguggcuucgccgaGCCGGCCgagGCGGuCACCuuGCUCc -3'
miRNA:   3'- aCUGG--------------UGGCUGG---CGUU-GUGGggCGAG- -5'
23131 5' -59.3 NC_005178.1 + 18084 0.68 0.27993
Target:  5'- cUGGCgaACCuGCCGCAGCGCCUgGCcCa -3'
miRNA:   3'- -ACUGg-UGGcUGGCGUUGUGGGgCGaG- -5'
23131 5' -59.3 NC_005178.1 + 25770 0.68 0.27993
Target:  5'- aUGugCagGCCGGCCuGCGGCggaACCCCcaugGCUCg -3'
miRNA:   3'- -ACugG--UGGCUGG-CGUUG---UGGGG----CGAG- -5'
23131 5' -59.3 NC_005178.1 + 11093 0.68 0.27291
Target:  5'- --uCCACCucGGCCgGCAGCGCCgCGCUg -3'
miRNA:   3'- acuGGUGG--CUGG-CGUUGUGGgGCGAg -5'
23131 5' -59.3 NC_005178.1 + 28406 0.68 0.27291
Target:  5'- aGGCaCACCGACCaGCGACagcauaccgGCCUgGCUa -3'
miRNA:   3'- aCUG-GUGGCUGG-CGUUG---------UGGGgCGAg -5'
23131 5' -59.3 NC_005178.1 + 28953 0.69 0.266032
Target:  5'- cGGCCaucGCCGugCGCcagGugACCCUGCg- -3'
miRNA:   3'- aCUGG---UGGCugGCG---UugUGGGGCGag -5'
23131 5' -59.3 NC_005178.1 + 24388 0.69 0.259295
Target:  5'- aUGuuCACCGcGCCGCAGCcgaccguuGCCCUGCg- -3'
miRNA:   3'- -ACugGUGGC-UGGCGUUG--------UGGGGCGag -5'
23131 5' -59.3 NC_005178.1 + 15710 0.69 0.259295
Target:  5'- gGACCAUCGAgCCGCcGCGCaaCGcCUCg -3'
miRNA:   3'- aCUGGUGGCU-GGCGuUGUGggGC-GAG- -5'
23131 5' -59.3 NC_005178.1 + 24649 0.69 0.259295
Target:  5'- -cACCACCGGCCaGCAACugCgCCGa-- -3'
miRNA:   3'- acUGGUGGCUGG-CGUUGugG-GGCgag -5'
23131 5' -59.3 NC_005178.1 + 32838 0.69 0.259295
Target:  5'- cGACCAUCG-CUGCAAggucaACCUCGUUCc -3'
miRNA:   3'- aCUGGUGGCuGGCGUUg----UGGGGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.