Results 1 - 18 of 18 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23132 | 3' | -60 | NC_005178.1 | + | 16448 | 0.66 | 0.349996 |
Target: 5'- aGGCGUUCAGG-CggCGCacacggacgaccuUGGCGCCAUc -3' miRNA: 3'- -UUGCAGGUCCaGaaGCG-------------GCCGCGGUA- -5' |
|||||||
23132 | 3' | -60 | NC_005178.1 | + | 10025 | 0.66 | 0.334139 |
Target: 5'- gGACuUCCAGGUCggCGUCGGCcuucuucugcGCCu- -3' miRNA: 3'- -UUGcAGGUCCAGaaGCGGCCG----------CGGua -5' |
|||||||
23132 | 3' | -60 | NC_005178.1 | + | 28145 | 0.66 | 0.334139 |
Target: 5'- cGGCGcCCAGGggCUgacgGUCGGCGCCu- -3' miRNA: 3'- -UUGCaGGUCCa-GAag--CGGCCGCGGua -5' |
|||||||
23132 | 3' | -60 | NC_005178.1 | + | 10094 | 0.66 | 0.318024 |
Target: 5'- --gGUCCAGG-CUgaugCGCUGGgcCGCCGUg -3' miRNA: 3'- uugCAGGUCCaGAa---GCGGCC--GCGGUA- -5' |
|||||||
23132 | 3' | -60 | NC_005178.1 | + | 4911 | 0.67 | 0.3025 |
Target: 5'- aGACGaCCAGGUCgacggcacCGCuCGGCGaCCGg -3' miRNA: 3'- -UUGCaGGUCCAGaa------GCG-GCCGC-GGUa -5' |
|||||||
23132 | 3' | -60 | NC_005178.1 | + | 23098 | 0.67 | 0.287566 |
Target: 5'- cACGUCCAuGGUg-UCGUCGGCcgaGCCGa -3' miRNA: 3'- uUGCAGGU-CCAgaAGCGGCCG---CGGUa -5' |
|||||||
23132 | 3' | -60 | NC_005178.1 | + | 461 | 0.68 | 0.25945 |
Target: 5'- gAACG-CCAGGUCgcCGaCCGGgaCGCCAg -3' miRNA: 3'- -UUGCaGGUCCAGaaGC-GGCC--GCGGUa -5' |
|||||||
23132 | 3' | -60 | NC_005178.1 | + | 22707 | 0.68 | 0.252781 |
Target: 5'- -uCG-CCGGGUCgcUGCCGaGUGCCAUa -3' miRNA: 3'- uuGCaGGUCCAGaaGCGGC-CGCGGUA- -5' |
|||||||
23132 | 3' | -60 | NC_005178.1 | + | 19674 | 0.68 | 0.252122 |
Target: 5'- cGCGUgCCAGGgCUUgGCCagaagauGGCGCCGg -3' miRNA: 3'- uUGCA-GGUCCaGAAgCGG-------CCGCGGUa -5' |
|||||||
23132 | 3' | -60 | NC_005178.1 | + | 31306 | 0.68 | 0.246254 |
Target: 5'- cAGCG-CCGGG-CUaugCGCCuGGCGCCGc -3' miRNA: 3'- -UUGCaGGUCCaGAa--GCGG-CCGCGGUa -5' |
|||||||
23132 | 3' | -60 | NC_005178.1 | + | 13227 | 0.68 | 0.239867 |
Target: 5'- gAACGgCUGGGUCgggGCCGGCGUCGg -3' miRNA: 3'- -UUGCaGGUCCAGaagCGGCCGCGGUa -5' |
|||||||
23132 | 3' | -60 | NC_005178.1 | + | 5737 | 0.68 | 0.227508 |
Target: 5'- cGACGU-CAGGUCUUCGCUuucguccgGGUGCUg- -3' miRNA: 3'- -UUGCAgGUCCAGAAGCGG--------CCGCGGua -5' |
|||||||
23132 | 3' | -60 | NC_005178.1 | + | 25404 | 0.69 | 0.204407 |
Target: 5'- gGACGUCgcgguaggcgCGGGUCUgugCGUCGGCGCa-- -3' miRNA: 3'- -UUGCAG----------GUCCAGAa--GCGGCCGCGgua -5' |
|||||||
23132 | 3' | -60 | NC_005178.1 | + | 14285 | 0.69 | 0.193111 |
Target: 5'- cAAgGUCCAGGUCUUCGgcuCCGGCaagcggaugcgcgGCCu- -3' miRNA: 3'- -UUgCAGGUCCAGAAGC---GGCCG-------------CGGua -5' |
|||||||
23132 | 3' | -60 | NC_005178.1 | + | 29823 | 0.7 | 0.178414 |
Target: 5'- aGGCGcuucUUCAGGUCUUCgGCCGGCuCCGa -3' miRNA: 3'- -UUGC----AGGUCCAGAAG-CGGCCGcGGUa -5' |
|||||||
23132 | 3' | -60 | NC_005178.1 | + | 28942 | 0.71 | 0.155398 |
Target: 5'- cGCGUCCGgcacGGcCaUCGCCGuGCGCCAg -3' miRNA: 3'- uUGCAGGU----CCaGaAGCGGC-CGCGGUa -5' |
|||||||
23132 | 3' | -60 | NC_005178.1 | + | 11492 | 0.72 | 0.12769 |
Target: 5'- -uCGUCCAGGcCgUCGCUGGCGUUAc -3' miRNA: 3'- uuGCAGGUCCaGaAGCGGCCGCGGUa -5' |
|||||||
23132 | 3' | -60 | NC_005178.1 | + | 20958 | 1.03 | 0.000517 |
Target: 5'- cAACGUCCAGGUCUUCGCCGGCGCCAUc -3' miRNA: 3'- -UUGCAGGUCCAGAAGCGGCCGCGGUA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home