miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23132 5' -58.8 NC_005178.1 + 16421 0.66 0.44757
Target:  5'- uGACGCUGCCGucGUUCGCCcacuUGaaGGCGu -3'
miRNA:   3'- cUUGCGAUGGCc-CAAGCGGc---AC--CCGC- -5'
23132 5' -58.8 NC_005178.1 + 29597 0.66 0.44757
Target:  5'- --cCGCgaaACCGaGGgaCGCCGcuaccUGGGCGa -3'
miRNA:   3'- cuuGCGa--UGGC-CCaaGCGGC-----ACCCGC- -5'
23132 5' -58.8 NC_005178.1 + 36599 0.66 0.44757
Target:  5'- cGAACGCgacaaCGGGUUC-CUcUGGGCu -3'
miRNA:   3'- -CUUGCGaug--GCCCAAGcGGcACCCGc -5'
23132 5' -58.8 NC_005178.1 + 5520 0.66 0.436859
Target:  5'- cGGugGCgACCaGGGUcaggucgUCGgCGUGGGuCGg -3'
miRNA:   3'- -CUugCGaUGG-CCCA-------AGCgGCACCC-GC- -5'
23132 5' -58.8 NC_005178.1 + 14098 0.66 0.428206
Target:  5'- --uCGC-GCCGGGcgcccuggccgUCGCCcUGGGCGu -3'
miRNA:   3'- cuuGCGaUGGCCCa----------AGCGGcACCCGC- -5'
23132 5' -58.8 NC_005178.1 + 2719 0.66 0.428206
Target:  5'- -cGCGCUGCUGaa--CGCCGcccUGGGCGa -3'
miRNA:   3'- cuUGCGAUGGCccaaGCGGC---ACCCGC- -5'
23132 5' -58.8 NC_005178.1 + 33579 0.66 0.409346
Target:  5'- gGAACaGCgGCCGGGccUCGUCGUcGGUGa -3'
miRNA:   3'- -CUUG-CGaUGGCCCa-AGCGGCAcCCGC- -5'
23132 5' -58.8 NC_005178.1 + 35990 0.66 0.408417
Target:  5'- cAACGCUGCCGacUUCcggccagGCCGaGGGCGa -3'
miRNA:   3'- cUUGCGAUGGCccAAG-------CGGCaCCCGC- -5'
23132 5' -58.8 NC_005178.1 + 28307 0.67 0.38205
Target:  5'- ---aGCUGCCGGGgcCGCUGgaguggcugGuGGCGg -3'
miRNA:   3'- cuugCGAUGGCCCaaGCGGCa--------C-CCGC- -5'
23132 5' -58.8 NC_005178.1 + 17053 0.67 0.355993
Target:  5'- cGGgGUUACCGGGggCGgCGaccuucagcUGGGCGg -3'
miRNA:   3'- cUUgCGAUGGCCCaaGCgGC---------ACCCGC- -5'
23132 5' -58.8 NC_005178.1 + 10347 0.68 0.347589
Target:  5'- aAGCGC-GCCGGGcugCGCUggccgagcugGUGGGCa -3'
miRNA:   3'- cUUGCGaUGGCCCaa-GCGG----------CACCCGc -5'
23132 5' -58.8 NC_005178.1 + 31391 0.68 0.323238
Target:  5'- uGACGCUguuugGCUGGGgcgCGCgCGUuuGGGCGc -3'
miRNA:   3'- cUUGCGA-----UGGCCCaa-GCG-GCA--CCCGC- -5'
23132 5' -58.8 NC_005178.1 + 28563 0.68 0.323238
Target:  5'- -cGCGCcACCGGGggCGUCGccGGCa -3'
miRNA:   3'- cuUGCGaUGGCCCaaGCGGCacCCGc -5'
23132 5' -58.8 NC_005178.1 + 8737 0.68 0.307723
Target:  5'- cGAGgGCUACUucgcccUUGCCGUGGGCGa -3'
miRNA:   3'- -CUUgCGAUGGccca--AGCGGCACCCGC- -5'
23132 5' -58.8 NC_005178.1 + 28107 0.69 0.292783
Target:  5'- --cUGCUuuCCGGGUUUgGCC-UGGGCGg -3'
miRNA:   3'- cuuGCGAu-GGCCCAAG-CGGcACCCGC- -5'
23132 5' -58.8 NC_005178.1 + 26703 0.69 0.264616
Target:  5'- aGAcCGUUGCCGGGgUgGCCaaGGGCGc -3'
miRNA:   3'- -CUuGCGAUGGCCCaAgCGGcaCCCGC- -5'
23132 5' -58.8 NC_005178.1 + 34571 0.7 0.251377
Target:  5'- uGGGCGUgccUACCGGGga-GCUGgccGGGCGa -3'
miRNA:   3'- -CUUGCG---AUGGCCCaagCGGCa--CCCGC- -5'
23132 5' -58.8 NC_005178.1 + 22084 0.71 0.209301
Target:  5'- ---aGCUGCUGGGUUCGCaggGGGUu -3'
miRNA:   3'- cuugCGAUGGCCCAAGCGgcaCCCGc -5'
23132 5' -58.8 NC_005178.1 + 3755 0.73 0.155499
Target:  5'- uGACGC-GCCGGGccaUCGCCaaGGGCGg -3'
miRNA:   3'- cUUGCGaUGGCCCa--AGCGGcaCCCGC- -5'
23132 5' -58.8 NC_005178.1 + 20993 1.09 0.000281
Target:  5'- cGAACGCUACCGGGUUCGCCGUGGGCGg -3'
miRNA:   3'- -CUUGCGAUGGCCCAAGCGGCACCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.