Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23133 | 5' | -54.6 | NC_005178.1 | + | 4963 | 0.7 | 0.439966 |
Target: 5'- gACAUCGaGGuCGGCCGGugCGgugaUGCg -3' miRNA: 3'- aUGUAGCaCCuGCUGGUCugGCa---GCG- -5' |
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23133 | 5' | -54.6 | NC_005178.1 | + | 13311 | 0.7 | 0.420299 |
Target: 5'- cGgGUCGagGGGCG-CCGGGCUGcUCGCg -3' miRNA: 3'- aUgUAGCa-CCUGCuGGUCUGGC-AGCG- -5' |
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23133 | 5' | -54.6 | NC_005178.1 | + | 21577 | 0.7 | 0.401173 |
Target: 5'- gACAUCGaGGACGACCAaAUCGgcaucuacUCGCc -3' miRNA: 3'- aUGUAGCaCCUGCUGGUcUGGC--------AGCG- -5' |
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23133 | 5' | -54.6 | NC_005178.1 | + | 33026 | 0.71 | 0.39182 |
Target: 5'- gGC-UCGaUGGGCaGGCCGGAgCGUUGCc -3' miRNA: 3'- aUGuAGC-ACCUG-CUGGUCUgGCAGCG- -5' |
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23133 | 5' | -54.6 | NC_005178.1 | + | 33454 | 0.71 | 0.39182 |
Target: 5'- gGCGUCGUGGAUGucguagcCCAcGGCCaccugGUCGCc -3' miRNA: 3'- aUGUAGCACCUGCu------GGU-CUGG-----CAGCG- -5' |
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23133 | 5' | -54.6 | NC_005178.1 | + | 14094 | 0.71 | 0.39182 |
Target: 5'- gGCuUCGcgccGGGCGcCCuGGCCGUCGCc -3' miRNA: 3'- aUGuAGCa---CCUGCuGGuCUGGCAGCG- -5' |
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23133 | 5' | -54.6 | NC_005178.1 | + | 8153 | 0.71 | 0.355858 |
Target: 5'- gAgAUCGcccguggGGACGACCAGGUCGuUCGCg -3' miRNA: 3'- aUgUAGCa------CCUGCUGGUCUGGC-AGCG- -5' |
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23133 | 5' | -54.6 | NC_005178.1 | + | 22296 | 0.71 | 0.347238 |
Target: 5'- -uCGUCGUGGucuGCGGCCGGGaaGUgGCg -3' miRNA: 3'- auGUAGCACC---UGCUGGUCUggCAgCG- -5' |
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23133 | 5' | -54.6 | NC_005178.1 | + | 11467 | 0.74 | 0.229751 |
Target: 5'- gGCAgCGUccgccccucGGGCGAugucguCCAGGCCGUCGCu -3' miRNA: 3'- aUGUaGCA---------CCUGCU------GGUCUGGCAGCG- -5' |
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23133 | 5' | -54.6 | NC_005178.1 | + | 16676 | 0.76 | 0.169934 |
Target: 5'- gGCgGUCcUGGGCGAUCAGGCCGgCGCa -3' miRNA: 3'- aUG-UAGcACCUGCUGGUCUGGCaGCG- -5' |
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23133 | 5' | -54.6 | NC_005178.1 | + | 32106 | 0.78 | 0.139502 |
Target: 5'- ---uUCGcgaaUGGuCGGCCGGGCCGUCGCg -3' miRNA: 3'- auguAGC----ACCuGCUGGUCUGGCAGCG- -5' |
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23133 | 5' | -54.6 | NC_005178.1 | + | 21180 | 1.09 | 0.00079 |
Target: 5'- cUACAUCGUGGACGACCAGACCGUCGCc -3' miRNA: 3'- -AUGUAGCACCUGCUGGUCUGGCAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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