miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23133 5' -54.6 NC_005178.1 + 4963 0.7 0.439966
Target:  5'- gACAUCGaGGuCGGCCGGugCGgugaUGCg -3'
miRNA:   3'- aUGUAGCaCCuGCUGGUCugGCa---GCG- -5'
23133 5' -54.6 NC_005178.1 + 13311 0.7 0.420299
Target:  5'- cGgGUCGagGGGCG-CCGGGCUGcUCGCg -3'
miRNA:   3'- aUgUAGCa-CCUGCuGGUCUGGC-AGCG- -5'
23133 5' -54.6 NC_005178.1 + 21577 0.7 0.401173
Target:  5'- gACAUCGaGGACGACCAaAUCGgcaucuacUCGCc -3'
miRNA:   3'- aUGUAGCaCCUGCUGGUcUGGC--------AGCG- -5'
23133 5' -54.6 NC_005178.1 + 33026 0.71 0.39182
Target:  5'- gGC-UCGaUGGGCaGGCCGGAgCGUUGCc -3'
miRNA:   3'- aUGuAGC-ACCUG-CUGGUCUgGCAGCG- -5'
23133 5' -54.6 NC_005178.1 + 33454 0.71 0.39182
Target:  5'- gGCGUCGUGGAUGucguagcCCAcGGCCaccugGUCGCc -3'
miRNA:   3'- aUGUAGCACCUGCu------GGU-CUGG-----CAGCG- -5'
23133 5' -54.6 NC_005178.1 + 14094 0.71 0.39182
Target:  5'- gGCuUCGcgccGGGCGcCCuGGCCGUCGCc -3'
miRNA:   3'- aUGuAGCa---CCUGCuGGuCUGGCAGCG- -5'
23133 5' -54.6 NC_005178.1 + 8153 0.71 0.355858
Target:  5'- gAgAUCGcccguggGGACGACCAGGUCGuUCGCg -3'
miRNA:   3'- aUgUAGCa------CCUGCUGGUCUGGC-AGCG- -5'
23133 5' -54.6 NC_005178.1 + 22296 0.71 0.347238
Target:  5'- -uCGUCGUGGucuGCGGCCGGGaaGUgGCg -3'
miRNA:   3'- auGUAGCACC---UGCUGGUCUggCAgCG- -5'
23133 5' -54.6 NC_005178.1 + 11467 0.74 0.229751
Target:  5'- gGCAgCGUccgccccucGGGCGAugucguCCAGGCCGUCGCu -3'
miRNA:   3'- aUGUaGCA---------CCUGCU------GGUCUGGCAGCG- -5'
23133 5' -54.6 NC_005178.1 + 16676 0.76 0.169934
Target:  5'- gGCgGUCcUGGGCGAUCAGGCCGgCGCa -3'
miRNA:   3'- aUG-UAGcACCUGCUGGUCUGGCaGCG- -5'
23133 5' -54.6 NC_005178.1 + 32106 0.78 0.139502
Target:  5'- ---uUCGcgaaUGGuCGGCCGGGCCGUCGCg -3'
miRNA:   3'- auguAGC----ACCuGCUGGUCUGGCAGCG- -5'
23133 5' -54.6 NC_005178.1 + 21180 1.09 0.00079
Target:  5'- cUACAUCGUGGACGACCAGACCGUCGCc -3'
miRNA:   3'- -AUGUAGCACCUGCUGGUCUGGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.