miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23134 3' -64.1 NC_005178.1 + 36166 0.66 0.193999
Target:  5'- -uCGUCUUUGCGGCGggccauguucaaGCCCUCGCUuCg -3'
miRNA:   3'- uuGCGGAAGCGCCGC------------CGGGGGUGGuG- -5'
23134 3' -64.1 NC_005178.1 + 32270 0.69 0.122648
Target:  5'- cGCGCCggCccugaacgGUGGCGGCCUCgGCCAa -3'
miRNA:   3'- uUGCGGaaG--------CGCCGCCGGGGgUGGUg -5'
23134 3' -64.1 NC_005178.1 + 31413 0.68 0.156736
Target:  5'- --aGCCUUCGCGGCG-CUaCCGCCu- -3'
miRNA:   3'- uugCGGAAGCGCCGCcGGgGGUGGug -5'
23134 3' -64.1 NC_005178.1 + 31139 0.68 0.156736
Target:  5'- -uUGUCaUCGCGGC-GCgCCUCGCCGCg -3'
miRNA:   3'- uuGCGGaAGCGCCGcCG-GGGGUGGUG- -5'
23134 3' -64.1 NC_005178.1 + 28531 0.68 0.156314
Target:  5'- cGGCGCuacaugaCUggGCGGgGGCCgUCCGCCGCg -3'
miRNA:   3'- -UUGCG-------GAagCGCCgCCGG-GGGUGGUG- -5'
23134 3' -64.1 NC_005178.1 + 26162 0.7 0.092918
Target:  5'- uAGCGCCUUuaucaucaucggCGCGGCGGUggCCGCUGCg -3'
miRNA:   3'- -UUGCGGAA------------GCGCCGCCGggGGUGGUG- -5'
23134 3' -64.1 NC_005178.1 + 25781 0.68 0.144514
Target:  5'- --gGCCU--GCGGCGGaaCCCCCAUgGCu -3'
miRNA:   3'- uugCGGAagCGCCGCC--GGGGGUGgUG- -5'
23134 3' -64.1 NC_005178.1 + 25429 0.68 0.13574
Target:  5'- uGCGUCggCGCaGGCGGCgCgcccaucggccaggCCCGCCACg -3'
miRNA:   3'- uUGCGGaaGCG-CCGCCG-G--------------GGGUGGUG- -5'
23134 3' -64.1 NC_005178.1 + 22584 0.73 0.062578
Target:  5'- aGGCGCUUgCGgaUGGCGGCCUCgACCACg -3'
miRNA:   3'- -UUGCGGAaGC--GCCGCCGGGGgUGGUG- -5'
23134 3' -64.1 NC_005178.1 + 21372 1.05 0.000139
Target:  5'- cAACGCCUUCGCGGCGGCCCCCACCACc -3'
miRNA:   3'- -UUGCGGAAGCGCCGCCGGGGGUGGUG- -5'
23134 3' -64.1 NC_005178.1 + 20994 0.67 0.161014
Target:  5'- gAACGCUaccgggUUCGCcgugGGCGGCagcaCCGCCACc -3'
miRNA:   3'- -UUGCGG------AAGCG----CCGCCGgg--GGUGGUG- -5'
23134 3' -64.1 NC_005178.1 + 20463 0.67 0.159719
Target:  5'- gAACcCCUUgCGCuccagguacucaauGGCGGCCUCCgGCCGCa -3'
miRNA:   3'- -UUGcGGAA-GCG--------------CCGCCGGGGG-UGGUG- -5'
23134 3' -64.1 NC_005178.1 + 20242 0.69 0.131
Target:  5'- -cCGCCgUC-CGGCGcaaccacuaucugacGCCCCCACCAg -3'
miRNA:   3'- uuGCGGaAGcGCCGC---------------CGGGGGUGGUg -5'
23134 3' -64.1 NC_005178.1 + 20136 0.66 0.204457
Target:  5'- --gGCCUcguaUGCGGCGGCauagcgCCCgGCCAUg -3'
miRNA:   3'- uugCGGAa---GCGCCGCCG------GGGgUGGUG- -5'
23134 3' -64.1 NC_005178.1 + 16940 0.67 0.179192
Target:  5'- cAGCGCCcUgGCGGauGCCCuCCAUCGu -3'
miRNA:   3'- -UUGCGGaAgCGCCgcCGGG-GGUGGUg -5'
23134 3' -64.1 NC_005178.1 + 12083 0.69 0.118008
Target:  5'- cAGCGCCUgguggaguggucgCGUGGCGGgCCUgGCCGa -3'
miRNA:   3'- -UUGCGGAa------------GCGCCGCCgGGGgUGGUg -5'
23134 3' -64.1 NC_005178.1 + 11932 0.69 0.119317
Target:  5'- gGugGCUUUCGCcGCaGCCUCgGCCGCu -3'
miRNA:   3'- -UugCGGAAGCGcCGcCGGGGgUGGUG- -5'
23134 3' -64.1 NC_005178.1 + 11362 0.73 0.059113
Target:  5'- cAGCGCCacgccCGCaGCGGCCaCCGCCGCg -3'
miRNA:   3'- -UUGCGGaa---GCGcCGCCGGgGGUGGUG- -5'
23134 3' -64.1 NC_005178.1 + 10931 0.66 0.193489
Target:  5'- cGCGCCgagUCGaucCGGCGcggcccgccuccuGCCCCCcgcgucACCACa -3'
miRNA:   3'- uUGCGGa--AGC---GCCGC-------------CGGGGG------UGGUG- -5'
23134 3' -64.1 NC_005178.1 + 10885 0.66 0.193999
Target:  5'- gGACGCCUUCGCGaaGGUCaaggcguaUCGCCAg -3'
miRNA:   3'- -UUGCGGAAGCGCcgCCGGg-------GGUGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.