Results 21 - 26 of 26 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23134 | 3' | -64.1 | NC_005178.1 | + | 16940 | 0.67 | 0.179192 |
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Target: 5'- cAGCGCCcUgGCGGauGCCCuCCAUCGu -3' miRNA: 3'- -UUGCGGaAgCGCCgcCGGG-GGUGGUg -5' |
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| 23134 | 3' | -64.1 | NC_005178.1 | + | 5740 | 0.67 | 0.161014 |
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Target: 5'- -uCGCCgcaUCgGUGGCGGCCUCgGgCACg -3' miRNA: 3'- uuGCGGa--AG-CGCCGCCGGGGgUgGUG- -5' |
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| 23134 | 3' | -64.1 | NC_005178.1 | + | 20994 | 0.67 | 0.161014 |
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Target: 5'- gAACGCUaccgggUUCGCcgugGGCGGCagcaCCGCCACc -3' miRNA: 3'- -UUGCGG------AAGCG----CCGCCGgg--GGUGGUG- -5' |
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| 23134 | 3' | -64.1 | NC_005178.1 | + | 28531 | 0.68 | 0.156314 |
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Target: 5'- cGGCGCuacaugaCUggGCGGgGGCCgUCCGCCGCg -3' miRNA: 3'- -UUGCG-------GAagCGCCgCCGG-GGGUGGUG- -5' |
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| 23134 | 3' | -64.1 | NC_005178.1 | + | 12083 | 0.69 | 0.118008 |
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Target: 5'- cAGCGCCUgguggaguggucgCGUGGCGGgCCUgGCCGa -3' miRNA: 3'- -UUGCGGAa------------GCGCCGCCgGGGgUGGUg -5' |
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| 23134 | 3' | -64.1 | NC_005178.1 | + | 26162 | 0.7 | 0.092918 |
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Target: 5'- uAGCGCCUUuaucaucaucggCGCGGCGGUggCCGCUGCg -3' miRNA: 3'- -UUGCGGAA------------GCGCCGCCGggGGUGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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