miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23134 5' -54 NC_005178.1 + 2824 0.69 0.480105
Target:  5'- cCGCCA-GGggGUGCU--GC-ACGCCc -3'
miRNA:   3'- aGCGGUaCCuuCACGGcuCGuUGUGG- -5'
23134 5' -54 NC_005178.1 + 3018 0.72 0.353895
Target:  5'- gCGCUuccUGGAccAG-GCCGAGCGugGCGCCc -3'
miRNA:   3'- aGCGGu--ACCU--UCaCGGCUCGU--UGUGG- -5'
23134 5' -54 NC_005178.1 + 3622 0.72 0.328288
Target:  5'- aCGCCccGGAaagccggcaccAGgccGCCGAGCAuCGCCg -3'
miRNA:   3'- aGCGGuaCCU-----------UCa--CGGCUCGUuGUGG- -5'
23134 5' -54 NC_005178.1 + 3686 0.69 0.501453
Target:  5'- cCGCCAaGGAAcUGCCcGGCuACAUCg -3'
miRNA:   3'- aGCGGUaCCUUcACGGcUCGuUGUGG- -5'
23134 5' -54 NC_005178.1 + 4931 0.69 0.501453
Target:  5'- aUCGCCGaGGAAcugGCCGccAGCGGcCGCCc -3'
miRNA:   3'- -AGCGGUaCCUUca-CGGC--UCGUU-GUGG- -5'
23134 5' -54 NC_005178.1 + 6050 0.7 0.445891
Target:  5'- -aGCCGUGauGAagacGGUGCCGAGggguggccgccccuCGACACCu -3'
miRNA:   3'- agCGGUAC--CU----UCACGGCUC--------------GUUGUGG- -5'
23134 5' -54 NC_005178.1 + 6724 0.73 0.273965
Target:  5'- -aGCCA-GGAGGUGCCGccauGCGCCg -3'
miRNA:   3'- agCGGUaCCUUCACGGCucguUGUGG- -5'
23134 5' -54 NC_005178.1 + 8041 0.69 0.473787
Target:  5'- uUCGCCAUcgugccuuucgaagcGGAGGUGCagugacauGGCcGACACCa -3'
miRNA:   3'- -AGCGGUA---------------CCUUCACGgc------UCG-UUGUGG- -5'
23134 5' -54 NC_005178.1 + 8828 0.71 0.371734
Target:  5'- gUCGCCcgGcgcGUGCCGGGUgugagccccGACGCCa -3'
miRNA:   3'- -AGCGGuaCcuuCACGGCUCG---------UUGUGG- -5'
23134 5' -54 NC_005178.1 + 8977 0.66 0.658799
Target:  5'- aUGgCggGGAA-UGCCG-GCGACGCCc -3'
miRNA:   3'- aGCgGuaCCUUcACGGCuCGUUGUGG- -5'
23134 5' -54 NC_005178.1 + 9341 0.72 0.311992
Target:  5'- gCGCCGcucaGGAGcGUGCCGccAGCAGuCGCCa -3'
miRNA:   3'- aGCGGUa---CCUU-CACGGC--UCGUU-GUGG- -5'
23134 5' -54 NC_005178.1 + 9830 0.66 0.658799
Target:  5'- aUCGCCAaGGcccaGCUGGGCAuggacgaugACACCu -3'
miRNA:   3'- -AGCGGUaCCuucaCGGCUCGU---------UGUGG- -5'
23134 5' -54 NC_005178.1 + 9977 0.71 0.371734
Target:  5'- -aGCaccGGcAAG-GCCGGGCGACGCCa -3'
miRNA:   3'- agCGguaCC-UUCaCGGCUCGUUGUGG- -5'
23134 5' -54 NC_005178.1 + 10115 0.74 0.239743
Target:  5'- cCGCCGUGGuGGaacuuuUGUCGcGCAGCGCCu -3'
miRNA:   3'- aGCGGUACCuUC------ACGGCuCGUUGUGG- -5'
23134 5' -54 NC_005178.1 + 10567 0.71 0.371734
Target:  5'- cCGCUggauAUGGGAGauugucaaccgGCCGAGCGagccgGCACCg -3'
miRNA:   3'- aGCGG----UACCUUCa----------CGGCUCGU-----UGUGG- -5'
23134 5' -54 NC_005178.1 + 11208 0.71 0.399619
Target:  5'- cCGCCAcGGccucauacuGAGUGCCGuucgcccuggcgAGUGACGCCg -3'
miRNA:   3'- aGCGGUaCC---------UUCACGGC------------UCGUUGUGG- -5'
23134 5' -54 NC_005178.1 + 11304 0.67 0.613119
Target:  5'- cCGCCcaGGuGGUgGCCGGGCucUACCa -3'
miRNA:   3'- aGCGGuaCCuUCA-CGGCUCGuuGUGG- -5'
23134 5' -54 NC_005178.1 + 11725 0.71 0.380881
Target:  5'- -gGCCAUGGcgucagacGUGCCGAGCAGgCGgucCCg -3'
miRNA:   3'- agCGGUACCuu------CACGGCUCGUU-GU---GG- -5'
23134 5' -54 NC_005178.1 + 11771 0.69 0.48434
Target:  5'- -aGCCAUGGggGUuccgccgcagGCCG-GCcugcacauggaccagGACACCc -3'
miRNA:   3'- agCGGUACCuuCA----------CGGCuCG---------------UUGUGG- -5'
23134 5' -54 NC_005178.1 + 11835 0.72 0.345205
Target:  5'- gCGCC-UGGAGGcUGUCGAGCuuCuCCa -3'
miRNA:   3'- aGCGGuACCUUC-ACGGCUCGuuGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.