Results 21 - 40 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23135 | 5' | -52.6 | NC_005178.1 | + | 24366 | 0.66 | 0.725428 |
Target: 5'- -cGcCGCCACCAAGCaGGUGGGcauguucACCGc -3' miRNA: 3'- acCuGUGGUGGUUCGgCCAUUU-------UGGC- -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 26952 | 0.67 | 0.71538 |
Target: 5'- gUGGAUugCugCGGuGCCGGcucgcucGGCCGg -3' miRNA: 3'- -ACCUGugGugGUU-CGGCCauu----UUGGC- -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 34168 | 0.67 | 0.71538 |
Target: 5'- gUGGugAUUuCC-GGCCGGaAGGGCCGg -3' miRNA: 3'- -ACCugUGGuGGuUCGGCCaUUUUGGC- -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 35421 | 0.67 | 0.71538 |
Target: 5'- cUGGcCGCCACCGacAGCCuGacgcuGACCGg -3' miRNA: 3'- -ACCuGUGGUGGU--UCGGcCauu--UUGGC- -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 15503 | 0.67 | 0.71538 |
Target: 5'- -aGAcCGCgCACCuGGCCGGUcuGGCCa -3' miRNA: 3'- acCU-GUG-GUGGuUCGGCCAuuUUGGc -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 30476 | 0.67 | 0.714259 |
Target: 5'- aGGuCACCGCCucgcccaGGGCCGGgcacucAAugCGg -3' miRNA: 3'- aCCuGUGGUGG-------UUCGGCCau----UUugGC- -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 21415 | 0.67 | 0.70413 |
Target: 5'- cGGGUACUucCCGAGCCGGaucggcAGACCGu -3' miRNA: 3'- aCCUGUGGu-GGUUCGGCCau----UUUGGC- -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 11648 | 0.67 | 0.70413 |
Target: 5'- cUGGugACCAC---GUCGGUGAucugcGCCGg -3' miRNA: 3'- -ACCugUGGUGguuCGGCCAUUu----UGGC- -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 4886 | 0.67 | 0.70413 |
Target: 5'- aUGGGCAUCA---AGCCGGccGGGACCa -3' miRNA: 3'- -ACCUGUGGUgguUCGGCCa-UUUUGGc -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 11812 | 0.67 | 0.70413 |
Target: 5'- aGGACACCcugGCCGccCUGGU--GACCGc -3' miRNA: 3'- aCCUGUGG---UGGUucGGCCAuuUUGGC- -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 23172 | 0.67 | 0.692803 |
Target: 5'- gGGGCACCuggugagcacuGCCGAGCCGuucgAuuACCu -3' miRNA: 3'- aCCUGUGG-----------UGGUUCGGCca--UuuUGGc -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 37143 | 0.67 | 0.692803 |
Target: 5'- aGGAgcuaCGCCGCCAGGCCuaucgcACCGa -3' miRNA: 3'- aCCU----GUGGUGGUUCGGccauuuUGGC- -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 8142 | 0.67 | 0.681412 |
Target: 5'- aGGGCGCCAUCGAgaucGCCcGUGGggacGACCa -3' miRNA: 3'- aCCUGUGGUGGUU----CGGcCAUU----UUGGc -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 17730 | 0.67 | 0.681412 |
Target: 5'- gGaGACgACCgACCGGGCCGGUcggAAGAUCc -3' miRNA: 3'- aC-CUG-UGG-UGGUUCGGCCA---UUUUGGc -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 21348 | 0.67 | 0.681412 |
Target: 5'- cUGcGGCAUgGCCgAGGCCGGUc--ACCGc -3' miRNA: 3'- -AC-CUGUGgUGG-UUCGGCCAuuuUGGC- -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 28263 | 0.67 | 0.669969 |
Target: 5'- cUGGcCGCCGCCAauggugucAGUgGGgu-GACCGg -3' miRNA: 3'- -ACCuGUGGUGGU--------UCGgCCauuUUGGC- -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 7587 | 0.67 | 0.669969 |
Target: 5'- cGGGCugCgcguuccacGCCAGGCCGuuaucgaaccccGUAuuGCCGg -3' miRNA: 3'- aCCUGugG---------UGGUUCGGC------------CAUuuUGGC- -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 15342 | 0.67 | 0.669969 |
Target: 5'- aUGaGCugCccccuuaugcGCCAGuGCCGGUGGAGCCa -3' miRNA: 3'- -ACcUGugG----------UGGUU-CGGCCAUUUUGGc -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 26459 | 0.67 | 0.669969 |
Target: 5'- cGcGGCGCUGCC-GGCCgaGGUGGAugCGg -3' miRNA: 3'- aC-CUGUGGUGGuUCGG--CCAUUUugGC- -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 3721 | 0.67 | 0.669969 |
Target: 5'- aUGGAcCGCCagGCCAAGCUGGcc--ACCu -3' miRNA: 3'- -ACCU-GUGG--UGGUUCGGCCauuuUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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