miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23135 5' -52.6 NC_005178.1 + 24366 0.66 0.725428
Target:  5'- -cGcCGCCACCAAGCaGGUGGGcauguucACCGc -3'
miRNA:   3'- acCuGUGGUGGUUCGgCCAUUU-------UGGC- -5'
23135 5' -52.6 NC_005178.1 + 26952 0.67 0.71538
Target:  5'- gUGGAUugCugCGGuGCCGGcucgcucGGCCGg -3'
miRNA:   3'- -ACCUGugGugGUU-CGGCCauu----UUGGC- -5'
23135 5' -52.6 NC_005178.1 + 34168 0.67 0.71538
Target:  5'- gUGGugAUUuCC-GGCCGGaAGGGCCGg -3'
miRNA:   3'- -ACCugUGGuGGuUCGGCCaUUUUGGC- -5'
23135 5' -52.6 NC_005178.1 + 35421 0.67 0.71538
Target:  5'- cUGGcCGCCACCGacAGCCuGacgcuGACCGg -3'
miRNA:   3'- -ACCuGUGGUGGU--UCGGcCauu--UUGGC- -5'
23135 5' -52.6 NC_005178.1 + 15503 0.67 0.71538
Target:  5'- -aGAcCGCgCACCuGGCCGGUcuGGCCa -3'
miRNA:   3'- acCU-GUG-GUGGuUCGGCCAuuUUGGc -5'
23135 5' -52.6 NC_005178.1 + 30476 0.67 0.714259
Target:  5'- aGGuCACCGCCucgcccaGGGCCGGgcacucAAugCGg -3'
miRNA:   3'- aCCuGUGGUGG-------UUCGGCCau----UUugGC- -5'
23135 5' -52.6 NC_005178.1 + 21415 0.67 0.70413
Target:  5'- cGGGUACUucCCGAGCCGGaucggcAGACCGu -3'
miRNA:   3'- aCCUGUGGu-GGUUCGGCCau----UUUGGC- -5'
23135 5' -52.6 NC_005178.1 + 11648 0.67 0.70413
Target:  5'- cUGGugACCAC---GUCGGUGAucugcGCCGg -3'
miRNA:   3'- -ACCugUGGUGguuCGGCCAUUu----UGGC- -5'
23135 5' -52.6 NC_005178.1 + 4886 0.67 0.70413
Target:  5'- aUGGGCAUCA---AGCCGGccGGGACCa -3'
miRNA:   3'- -ACCUGUGGUgguUCGGCCa-UUUUGGc -5'
23135 5' -52.6 NC_005178.1 + 11812 0.67 0.70413
Target:  5'- aGGACACCcugGCCGccCUGGU--GACCGc -3'
miRNA:   3'- aCCUGUGG---UGGUucGGCCAuuUUGGC- -5'
23135 5' -52.6 NC_005178.1 + 23172 0.67 0.692803
Target:  5'- gGGGCACCuggugagcacuGCCGAGCCGuucgAuuACCu -3'
miRNA:   3'- aCCUGUGG-----------UGGUUCGGCca--UuuUGGc -5'
23135 5' -52.6 NC_005178.1 + 37143 0.67 0.692803
Target:  5'- aGGAgcuaCGCCGCCAGGCCuaucgcACCGa -3'
miRNA:   3'- aCCU----GUGGUGGUUCGGccauuuUGGC- -5'
23135 5' -52.6 NC_005178.1 + 8142 0.67 0.681412
Target:  5'- aGGGCGCCAUCGAgaucGCCcGUGGggacGACCa -3'
miRNA:   3'- aCCUGUGGUGGUU----CGGcCAUU----UUGGc -5'
23135 5' -52.6 NC_005178.1 + 17730 0.67 0.681412
Target:  5'- gGaGACgACCgACCGGGCCGGUcggAAGAUCc -3'
miRNA:   3'- aC-CUG-UGG-UGGUUCGGCCA---UUUUGGc -5'
23135 5' -52.6 NC_005178.1 + 21348 0.67 0.681412
Target:  5'- cUGcGGCAUgGCCgAGGCCGGUc--ACCGc -3'
miRNA:   3'- -AC-CUGUGgUGG-UUCGGCCAuuuUGGC- -5'
23135 5' -52.6 NC_005178.1 + 28263 0.67 0.669969
Target:  5'- cUGGcCGCCGCCAauggugucAGUgGGgu-GACCGg -3'
miRNA:   3'- -ACCuGUGGUGGU--------UCGgCCauuUUGGC- -5'
23135 5' -52.6 NC_005178.1 + 7587 0.67 0.669969
Target:  5'- cGGGCugCgcguuccacGCCAGGCCGuuaucgaaccccGUAuuGCCGg -3'
miRNA:   3'- aCCUGugG---------UGGUUCGGC------------CAUuuUGGC- -5'
23135 5' -52.6 NC_005178.1 + 15342 0.67 0.669969
Target:  5'- aUGaGCugCccccuuaugcGCCAGuGCCGGUGGAGCCa -3'
miRNA:   3'- -ACcUGugG----------UGGUU-CGGCCAUUUUGGc -5'
23135 5' -52.6 NC_005178.1 + 26459 0.67 0.669969
Target:  5'- cGcGGCGCUGCC-GGCCgaGGUGGAugCGg -3'
miRNA:   3'- aC-CUGUGGUGGuUCGG--CCAUUUugGC- -5'
23135 5' -52.6 NC_005178.1 + 3721 0.67 0.669969
Target:  5'- aUGGAcCGCCagGCCAAGCUGGcc--ACCu -3'
miRNA:   3'- -ACCU-GUGG--UGGUUCGGCCauuuUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.