miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23137 5' -55.6 NC_005178.1 + 16811 0.66 0.598507
Target:  5'- cGGCGCUCUgcuguugGGUCAgggCGGcgaugggcuuggccuGGCCCAGGu -3'
miRNA:   3'- -UUGCGAGG-------CUAGUa--GCU---------------UCGGGUCCc -5'
23137 5' -55.6 NC_005178.1 + 2693 0.66 0.595128
Target:  5'- cGAgGCgUCCGGUCGggCGGaauccAGCCCGGuGGu -3'
miRNA:   3'- -UUgCG-AGGCUAGUa-GCU-----UCGGGUC-CC- -5'
23137 5' -55.6 NC_005178.1 + 17413 0.66 0.583888
Target:  5'- gGGCGCUaugCCGccgCAUaCGAGGCC-AGGGa -3'
miRNA:   3'- -UUGCGA---GGCua-GUA-GCUUCGGgUCCC- -5'
23137 5' -55.6 NC_005178.1 + 2117 0.66 0.572689
Target:  5'- uGGCGC-CCGGUCAgcgucaggcugUCGGuggcggccAGCgCCGGGGc -3'
miRNA:   3'- -UUGCGaGGCUAGU-----------AGCU--------UCG-GGUCCC- -5'
23137 5' -55.6 NC_005178.1 + 28633 0.66 0.55932
Target:  5'- cAGCGCacggaagccgggCCGAUCcugcuGGCCCAGGGu -3'
miRNA:   3'- -UUGCGa-----------GGCUAGuagcuUCGGGUCCC- -5'
23137 5' -55.6 NC_005178.1 + 30532 0.66 0.550456
Target:  5'- cGACGCUCgacgcgGAUCGUCGAGGgCgAcGGGu -3'
miRNA:   3'- -UUGCGAGg-----CUAGUAGCUUCgGgU-CCC- -5'
23137 5' -55.6 NC_005178.1 + 20336 0.66 0.550456
Target:  5'- cACGUUCCaGGUUAUCGA---CCAGGGc -3'
miRNA:   3'- uUGCGAGG-CUAGUAGCUucgGGUCCC- -5'
23137 5' -55.6 NC_005178.1 + 31910 0.67 0.539437
Target:  5'- uGGCGCUgCCGGUCAUCGGccaucgcugaucGGCau-GGGc -3'
miRNA:   3'- -UUGCGA-GGCUAGUAGCU------------UCGgguCCC- -5'
23137 5' -55.6 NC_005178.1 + 17852 0.67 0.517634
Target:  5'- gAGCGCcugCCGcccUCggCGAGGUCCAGGa -3'
miRNA:   3'- -UUGCGa--GGCu--AGuaGCUUCGGGUCCc -5'
23137 5' -55.6 NC_005178.1 + 28674 0.67 0.506865
Target:  5'- gGAUGUaCCGggCGaUGGAGCCCAGGu -3'
miRNA:   3'- -UUGCGaGGCuaGUaGCUUCGGGUCCc -5'
23137 5' -55.6 NC_005178.1 + 3818 0.68 0.464812
Target:  5'- -uCGC-CCGGauugcacaaacuUCAUCGAcuuucuuGCCCAGGGc -3'
miRNA:   3'- uuGCGaGGCU------------AGUAGCUu------CGGGUCCC- -5'
23137 5' -55.6 NC_005178.1 + 32304 0.69 0.414935
Target:  5'- -cUGCUCCaGGUUAaccgCGAcgcgacggacagAGCCCAGGGa -3'
miRNA:   3'- uuGCGAGG-CUAGUa---GCU------------UCGGGUCCC- -5'
23137 5' -55.6 NC_005178.1 + 33282 0.71 0.30189
Target:  5'- cACGCUCggcgCGAaucUCGUCGAGGUgagCCAGGGc -3'
miRNA:   3'- uUGCGAG----GCU---AGUAGCUUCG---GGUCCC- -5'
23137 5' -55.6 NC_005178.1 + 4524 0.72 0.265198
Target:  5'- cAACGCUCCGGccugccCAUCGAGccggacgccGCCCAGuGGu -3'
miRNA:   3'- -UUGCGAGGCUa-----GUAGCUU---------CGGGUC-CC- -5'
23137 5' -55.6 NC_005178.1 + 14205 0.72 0.258307
Target:  5'- cGACGCcccggugCCGAUC-UCGucGCCCAGGu -3'
miRNA:   3'- -UUGCGa------GGCUAGuAGCuuCGGGUCCc -5'
23137 5' -55.6 NC_005178.1 + 28131 0.72 0.251564
Target:  5'- gGugGCaCCGAUgG-CGgcGCCCAGGGg -3'
miRNA:   3'- -UugCGaGGCUAgUaGCuuCGGGUCCC- -5'
23137 5' -55.6 NC_005178.1 + 5306 0.74 0.191886
Target:  5'- cGCGCUacaUCGGUCGgcUCGAccaggcGGCCCAGGGc -3'
miRNA:   3'- uUGCGA---GGCUAGU--AGCU------UCGGGUCCC- -5'
23137 5' -55.6 NC_005178.1 + 22656 1.07 0.000742
Target:  5'- cAACGCUCCGAUCAUCGAAGCCCAGGGc -3'
miRNA:   3'- -UUGCGAGGCUAGUAGCUUCGGGUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.