miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23138 3' -54.5 NC_005178.1 + 32612 0.66 0.692839
Target:  5'- gCGGGcgGCCGcUGGCgGCCAguuccUCGGCGaUCUg -3'
miRNA:   3'- -GCUCa-CGGU-AUCG-CGGU-----AGCUGC-AGG- -5'
23138 3' -54.5 NC_005178.1 + 6436 0.66 0.670493
Target:  5'- aCGGGcggGCCGUcGGUGCCGaugcUGAcCGUCCa -3'
miRNA:   3'- -GCUCa--CGGUA-UCGCGGUa---GCU-GCAGG- -5'
23138 3' -54.5 NC_005178.1 + 8989 0.66 0.659258
Target:  5'- ----aGCUAcGGCGCCGUaGACGUCg -3'
miRNA:   3'- gcucaCGGUaUCGCGGUAgCUGCAGg -5'
23138 3' -54.5 NC_005178.1 + 20940 0.66 0.659258
Target:  5'- uCGGcGUGCCgGUAGCGgCA---ACGUCCa -3'
miRNA:   3'- -GCU-CACGG-UAUCGCgGUagcUGCAGG- -5'
23138 3' -54.5 NC_005178.1 + 17082 0.66 0.659258
Target:  5'- -uGG-GCgGUGGCGgCGgcgaucugcUCGACGUCCg -3'
miRNA:   3'- gcUCaCGgUAUCGCgGU---------AGCUGCAGG- -5'
23138 3' -54.5 NC_005178.1 + 15838 0.66 0.647995
Target:  5'- ----gGCUAUAGCGCUAUCGAgcuggacugGUCCc -3'
miRNA:   3'- gcucaCGGUAUCGCGGUAGCUg--------CAGG- -5'
23138 3' -54.5 NC_005178.1 + 26712 0.66 0.643486
Target:  5'- cCGGGgugGCCAagGGCGCCugggacgaaaugcUCGGCGUgggCCg -3'
miRNA:   3'- -GCUCa--CGGUa-UCGCGGu------------AGCUGCA---GG- -5'
23138 3' -54.5 NC_005178.1 + 11725 0.67 0.625436
Target:  5'- ----gGCCAUGGCGUCA--GACGUgCCg -3'
miRNA:   3'- gcucaCGGUAUCGCGGUagCUGCA-GG- -5'
23138 3' -54.5 NC_005178.1 + 31253 0.67 0.625436
Target:  5'- uCGAGcGCCugAGCGCC-UCGACaaauaUCCu -3'
miRNA:   3'- -GCUCaCGGuaUCGCGGuAGCUGc----AGG- -5'
23138 3' -54.5 NC_005178.1 + 35110 0.67 0.625436
Target:  5'- cCGAGcUGCCGcUGGCgGCCGgucCGaACGUCg -3'
miRNA:   3'- -GCUC-ACGGU-AUCG-CGGUa--GC-UGCAGg -5'
23138 3' -54.5 NC_005178.1 + 7190 0.68 0.569321
Target:  5'- cCGGG-GCCGacgacGCGCCGggaGACGUUCg -3'
miRNA:   3'- -GCUCaCGGUau---CGCGGUag-CUGCAGG- -5'
23138 3' -54.5 NC_005178.1 + 12806 0.68 0.569321
Target:  5'- gGAG-GUCGcGGcCGCCAuguUCGGCGUCUc -3'
miRNA:   3'- gCUCaCGGUaUC-GCGGU---AGCUGCAGG- -5'
23138 3' -54.5 NC_005178.1 + 16925 0.68 0.546087
Target:  5'- uGAGUcgGCCcuccuggAUAGCGCUGUUGAucaggcCGUCCa -3'
miRNA:   3'- gCUCA--CGG-------UAUCGCGGUAGCU------GCAGG- -5'
23138 3' -54.5 NC_005178.1 + 7835 0.68 0.536221
Target:  5'- gGGGuUGCCGgAGCGCCA-CGcUGUCUg -3'
miRNA:   3'- gCUC-ACGGUaUCGCGGUaGCuGCAGG- -5'
23138 3' -54.5 NC_005178.1 + 32389 0.68 0.525333
Target:  5'- cCGGG-GCUGUagaccGGCGCCAgguugCGgGCGUCCu -3'
miRNA:   3'- -GCUCaCGGUA-----UCGCGGUa----GC-UGCAGG- -5'
23138 3' -54.5 NC_005178.1 + 1755 0.68 0.525333
Target:  5'- cCGAG-GCCGUGGCGUUcaAUCguGAUGUCg -3'
miRNA:   3'- -GCUCaCGGUAUCGCGG--UAG--CUGCAGg -5'
23138 3' -54.5 NC_005178.1 + 31901 0.68 0.514529
Target:  5'- ---cUGCUgggAUGGCuuGCCAUCGGCGUUCa -3'
miRNA:   3'- gcucACGG---UAUCG--CGGUAGCUGCAGG- -5'
23138 3' -54.5 NC_005178.1 + 22101 0.69 0.492147
Target:  5'- gGGGuUGCCGUaaauauccacgauGGCgGCCAUCGuuGCGUCUc -3'
miRNA:   3'- gCUC-ACGGUA-------------UCG-CGGUAGC--UGCAGG- -5'
23138 3' -54.5 NC_005178.1 + 7634 0.69 0.476438
Target:  5'- gCGAGcUGCCAUugauuggaaccGGCguugaacgaccagugGCCGUCGGCGUUg -3'
miRNA:   3'- -GCUC-ACGGUA-----------UCG---------------CGGUAGCUGCAGg -5'
23138 3' -54.5 NC_005178.1 + 13274 0.69 0.472291
Target:  5'- ----cGCCGUAgGCGCCAUCGGC-UCg -3'
miRNA:   3'- gcucaCGGUAU-CGCGGUAGCUGcAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.