miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23139 3' -63.2 NC_005178.1 + 20364 0.69 0.123975
Target:  5'- aGGCCauugcGGCCCUGACC-GCccugaagCCGGCc -3'
miRNA:   3'- gUCGGa----CCGGGACUGGuCGa------GGCCGu -5'
23139 3' -63.2 NC_005178.1 + 20386 0.66 0.22435
Target:  5'- aGGCgUGacGCCUUGGCCAccgucagcGCUCgGGCAu -3'
miRNA:   3'- gUCGgAC--CGGGACUGGU--------CGAGgCCGU- -5'
23139 3' -63.2 NC_005178.1 + 20442 0.69 0.142301
Target:  5'- uCGGCCUGGCCCagGACgCGGacgUCGaGCAg -3'
miRNA:   3'- -GUCGGACCGGGa-CUG-GUCga-GGC-CGU- -5'
23139 3' -63.2 NC_005178.1 + 20733 0.68 0.163075
Target:  5'- uCGGCCUGGUuuugcauguCCUgGGCCGGCaggCUGGCc -3'
miRNA:   3'- -GUCGGACCG---------GGA-CUGGUCGa--GGCCGu -5'
23139 3' -63.2 NC_005178.1 + 22174 0.67 0.202005
Target:  5'- aCGGCuuCUGGCagCUGGCCuauGGCUccaCCGGCAc -3'
miRNA:   3'- -GUCG--GACCGg-GACUGG---UCGA---GGCCGU- -5'
23139 3' -63.2 NC_005178.1 + 23091 1.07 0.000125
Target:  5'- uCAGCCUGGCCCUGACCAGCUCCGGCAc -3'
miRNA:   3'- -GUCGGACCGGGACUGGUCGAGGCCGU- -5'
23139 3' -63.2 NC_005178.1 + 23477 0.68 0.157425
Target:  5'- aAGCC-GGCCCgcugcucGGCCGGCUgcucaaggcacugaCCGGCu -3'
miRNA:   3'- gUCGGaCCGGGa------CUGGUCGA--------------GGCCGu -5'
23139 3' -63.2 NC_005178.1 + 23546 0.69 0.13432
Target:  5'- uGGCCguccgggUGGUCC--ACCAGCUCgGGCAa -3'
miRNA:   3'- gUCGG-------ACCGGGacUGGUCGAGgCCGU- -5'
23139 3' -63.2 NC_005178.1 + 25842 0.75 0.043247
Target:  5'- -cGCCaUGGCCgUGGCCGGCauUUCGGCAg -3'
miRNA:   3'- guCGG-ACCGGgACUGGUCG--AGGCCGU- -5'
23139 3' -63.2 NC_005178.1 + 26206 0.7 0.117276
Target:  5'- uGGCgCUGGCUCUGGCguaugagaaaggCAGCUCagaGGCGa -3'
miRNA:   3'- gUCG-GACCGGGACUG------------GUCGAGg--CCGU- -5'
23139 3' -63.2 NC_005178.1 + 29962 0.68 0.146252
Target:  5'- aCGGCCUGGCgUggaacGCgCAGC-CCGGCAa -3'
miRNA:   3'- -GUCGGACCGgGac---UG-GUCGaGGCCGU- -5'
23139 3' -63.2 NC_005178.1 + 31069 0.77 0.034277
Target:  5'- --aCCUGGCCgaaCUGgcucACCAGCUCCGGCAa -3'
miRNA:   3'- gucGGACCGG---GAC----UGGUCGAGGCCGU- -5'
23139 3' -63.2 NC_005178.1 + 31177 0.67 0.191574
Target:  5'- cCGGaCCUGGUCCUGGUCAuCaCCGGCAa -3'
miRNA:   3'- -GUC-GGACCGGGACUGGUcGaGGCCGU- -5'
23139 3' -63.2 NC_005178.1 + 34537 0.67 0.181619
Target:  5'- uCGGCCUGGUCCagGAagcGCUCCaGGCu -3'
miRNA:   3'- -GUCGGACCGGGa-CUgguCGAGG-CCGu -5'
23139 3' -63.2 NC_005178.1 + 34676 0.7 0.10488
Target:  5'- gUAGCCUGaaCCCUGGCCAGCcguUCC-GCAu -3'
miRNA:   3'- -GUCGGACc-GGGACUGGUCG---AGGcCGU- -5'
23139 3' -63.2 NC_005178.1 + 34978 0.66 0.207403
Target:  5'- gCAGcCCUGgaaGCCC-GGCCAGCUUuguaGGCAu -3'
miRNA:   3'- -GUC-GGAC---CGGGaCUGGUCGAGg---CCGU- -5'
23139 3' -63.2 NC_005178.1 + 35561 0.66 0.205771
Target:  5'- uGGCCaGGCC--GACCAGCUgaucgauaccacggUCGGCAa -3'
miRNA:   3'- gUCGGaCCGGgaCUGGUCGA--------------GGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.