miRNA display CGI


Results 1 - 20 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23140 5' -53.1 NC_005178.1 + 23760 1.09 0.00083
Target:  5'- cUGCUGCGCCGUCAACUGAUCACCAAGa -3'
miRNA:   3'- -ACGACGCGGCAGUUGACUAGUGGUUC- -5'
23140 5' -53.1 NC_005178.1 + 29819 0.66 0.72747
Target:  5'- aGCUGCG-CGUUcacgccgaaacccuuGGCUgGGUCACCGAc -3'
miRNA:   3'- aCGACGCgGCAG---------------UUGA-CUAGUGGUUc -5'
23140 5' -53.1 NC_005178.1 + 31913 0.66 0.721874
Target:  5'- cGCUGC-CgGUCAucggccaucGCUGAUCggcauggGCCGAGc -3'
miRNA:   3'- aCGACGcGgCAGU---------UGACUAG-------UGGUUC- -5'
23140 5' -53.1 NC_005178.1 + 35419 0.66 0.687836
Target:  5'- cGCUG-GCCGcCAccgacagccugacGCUGAccgggCGCCAAGg -3'
miRNA:   3'- aCGACgCGGCaGU-------------UGACUa----GUGGUUC- -5'
23140 5' -53.1 NC_005178.1 + 2489 0.66 0.676353
Target:  5'- cUGCUGCGCuCGcccUCGGuaacgccCUGAUCGCCc-- -3'
miRNA:   3'- -ACGACGCG-GC---AGUU-------GACUAGUGGuuc -5'
23140 5' -53.1 NC_005178.1 + 11685 0.67 0.665979
Target:  5'- gGcCUGCGCacCGUCGaaucGCUGAUCGCUc-- -3'
miRNA:   3'- aC-GACGCG--GCAGU----UGACUAGUGGuuc -5'
23140 5' -53.1 NC_005178.1 + 8546 0.67 0.619651
Target:  5'- gGUagUGCGCCccaGUCAAUUGGUCaugccgcagGCCGAGc -3'
miRNA:   3'- aCG--ACGCGG---CAGUUGACUAG---------UGGUUC- -5'
23140 5' -53.1 NC_005178.1 + 9587 0.67 0.608071
Target:  5'- cGCUGCGCUGg--GC-GGUCGCCGc- -3'
miRNA:   3'- aCGACGCGGCaguUGaCUAGUGGUuc -5'
23140 5' -53.1 NC_005178.1 + 25170 0.67 0.608071
Target:  5'- aGCUGaugGCgGUCAACcaUGGcuUCGCCGGGg -3'
miRNA:   3'- aCGACg--CGgCAGUUG--ACU--AGUGGUUC- -5'
23140 5' -53.1 NC_005178.1 + 10357 0.68 0.58499
Target:  5'- gGCUGCGCUGgccgAGCUGGUgggcagcgaCAUCGAGg -3'
miRNA:   3'- aCGACGCGGCag--UUGACUA---------GUGGUUC- -5'
23140 5' -53.1 NC_005178.1 + 16611 0.68 0.562083
Target:  5'- gGCguccagGUGCCgGUCAACUGGgu-CCAGGa -3'
miRNA:   3'- aCGa-----CGCGG-CAGUUGACUaguGGUUC- -5'
23140 5' -53.1 NC_005178.1 + 16742 0.68 0.550719
Target:  5'- cGCUGCGCUGgccCAGgUGAUUggACCAc- -3'
miRNA:   3'- aCGACGCGGCa--GUUgACUAG--UGGUuc -5'
23140 5' -53.1 NC_005178.1 + 32641 0.7 0.452557
Target:  5'- aGCgGUGCCGUCGAcCUGGUCGuCUAc- -3'
miRNA:   3'- aCGaCGCGGCAGUU-GACUAGU-GGUuc -5'
23140 5' -53.1 NC_005178.1 + 9797 0.7 0.439155
Target:  5'- aGCcuacGCGCCGUCAACcucgcaaaaauccacAUCGCCAAGg -3'
miRNA:   3'- aCGa---CGCGGCAGUUGac-------------UAGUGGUUC- -5'
23140 5' -53.1 NC_005178.1 + 3076 0.69 0.517088
Target:  5'- cGCUGCGCCccGUCGAuCUGGUCGa---- -3'
miRNA:   3'- aCGACGCGG--CAGUU-GACUAGUgguuc -5'
23140 5' -53.1 NC_005178.1 + 13330 0.7 0.429001
Target:  5'- cUGCUcGCGCUGUCGgugaugaccaguucGCUGA-CGCCGAa -3'
miRNA:   3'- -ACGA-CGCGGCAGU--------------UGACUaGUGGUUc -5'
23140 5' -53.1 NC_005178.1 + 9797 0.71 0.383202
Target:  5'- cGCga-GCCGUCAccguACUGGcUCGCCAGGu -3'
miRNA:   3'- aCGacgCGGCAGU----UGACU-AGUGGUUC- -5'
23140 5' -53.1 NC_005178.1 + 18152 0.72 0.338179
Target:  5'- gGCUgcGCGCCGUUGGCUGAU-GCCGGc -3'
miRNA:   3'- aCGA--CGCGGCAGUUGACUAgUGGUUc -5'
23140 5' -53.1 NC_005178.1 + 20868 0.73 0.297127
Target:  5'- aUGcCUGCGCCGgc--CUGAUCGCCcAGg -3'
miRNA:   3'- -AC-GACGCGGCaguuGACUAGUGGuUC- -5'
23140 5' -53.1 NC_005178.1 + 35109 0.66 0.687836
Target:  5'- cUGuCUGCuGCCGUUgaaGACUGAagcgaggUCGCCAu- -3'
miRNA:   3'- -AC-GACG-CGGCAG---UUGACU-------AGUGGUuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.