miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23140 5' -53.1 NC_005178.1 + 9271 0.69 0.517088
Target:  5'- cGCaGCGCCgGUCAccccACUGA-CACCAu- -3'
miRNA:   3'- aCGaCGCGG-CAGU----UGACUaGUGGUuc -5'
23140 5' -53.1 NC_005178.1 + 25382 0.69 0.517088
Target:  5'- aGUUGUGCCGcCGACUGcu--CCAGGa -3'
miRNA:   3'- aCGACGCGGCaGUUGACuaguGGUUC- -5'
23140 5' -53.1 NC_005178.1 + 3076 0.69 0.517088
Target:  5'- cGCUGCGCCccGUCGAuCUGGUCGa---- -3'
miRNA:   3'- aCGACGCGG--CAGUU-GACUAGUgguuc -5'
23140 5' -53.1 NC_005178.1 + 32641 0.7 0.452557
Target:  5'- aGCgGUGCCGUCGAcCUGGUCGuCUAc- -3'
miRNA:   3'- aCGaCGCGGCAGUU-GACUAGU-GGUuc -5'
23140 5' -53.1 NC_005178.1 + 9797 0.7 0.439155
Target:  5'- aGCcuacGCGCCGUCAACcucgcaaaaauccacAUCGCCAAGg -3'
miRNA:   3'- aCGa---CGCGGCAGUUGac-------------UAGUGGUUC- -5'
23140 5' -53.1 NC_005178.1 + 13330 0.7 0.429001
Target:  5'- cUGCUcGCGCUGUCGgugaugaccaguucGCUGA-CGCCGAa -3'
miRNA:   3'- -ACGA-CGCGGCAGU--------------UGACUaGUGGUUc -5'
23140 5' -53.1 NC_005178.1 + 9797 0.71 0.383202
Target:  5'- cGCga-GCCGUCAccguACUGGcUCGCCAGGu -3'
miRNA:   3'- aCGacgCGGCAGU----UGACU-AGUGGUUC- -5'
23140 5' -53.1 NC_005178.1 + 18152 0.72 0.338179
Target:  5'- gGCUgcGCGCCGUUGGCUGAU-GCCGGc -3'
miRNA:   3'- aCGA--CGCGGCAGUUGACUAgUGGUUc -5'
23140 5' -53.1 NC_005178.1 + 20868 0.73 0.297127
Target:  5'- aUGcCUGCGCCGgc--CUGAUCGCCcAGg -3'
miRNA:   3'- -AC-GACGCGGCaguuGACUAGUGGuUC- -5'
23140 5' -53.1 NC_005178.1 + 6982 0.74 0.253104
Target:  5'- cGCUGCGaCCacCAACgGAUCGCCAGGc -3'
miRNA:   3'- aCGACGC-GGcaGUUGaCUAGUGGUUC- -5'
23140 5' -53.1 NC_005178.1 + 23760 1.09 0.00083
Target:  5'- cUGCUGCGCCGUCAACUGAUCACCAAGa -3'
miRNA:   3'- -ACGACGCGGCAGUUGACUAGUGGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.