miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23141 3' -49.6 NC_005178.1 + 13517 0.66 0.888929
Target:  5'- uGgcGGUCuuGC-CGauAGGGAAGCUGCGu -3'
miRNA:   3'- -CuuCCAGcuCGuGU--UCCUUUCGAUGU- -5'
23141 3' -49.6 NC_005178.1 + 17832 0.66 0.863822
Target:  5'- cAAGGcCGAGCGCAcccuGGGAgcGcCUGCc -3'
miRNA:   3'- cUUCCaGCUCGUGU----UCCUuuC-GAUGu -5'
23141 3' -49.6 NC_005178.1 + 19444 0.66 0.851217
Target:  5'- cAGGGUgaugcgcuauuaccUGAGCGaggacguCAAGGAGGGCUACc -3'
miRNA:   3'- cUUCCA--------------GCUCGU-------GUUCCUUUCGAUGu -5'
23141 3' -49.6 NC_005178.1 + 34182 0.67 0.836165
Target:  5'- cGAGG-CGAGCugGcGGGccGCUGCu -3'
miRNA:   3'- cUUCCaGCUCGugUuCCUuuCGAUGu -5'
23141 3' -49.6 NC_005178.1 + 6997 0.68 0.795821
Target:  5'- --cGGaUCGccaGGCGCGAGGAAGGCcauguUGCAc -3'
miRNA:   3'- cuuCC-AGC---UCGUGUUCCUUUCG-----AUGU- -5'
23141 3' -49.6 NC_005178.1 + 18883 0.68 0.795821
Target:  5'- gGGAGGUaCGGGCGCGccGGGAuAGUcaccuUACGg -3'
miRNA:   3'- -CUUCCA-GCUCGUGU--UCCUuUCG-----AUGU- -5'
23141 3' -49.6 NC_005178.1 + 36751 0.69 0.718044
Target:  5'- aGGAGGUCGGaacGCGCAucgcggAGGuggcuAGGCUGCu -3'
miRNA:   3'- -CUUCCAGCU---CGUGU------UCCu----UUCGAUGu -5'
23141 3' -49.6 NC_005178.1 + 17816 0.69 0.694703
Target:  5'- cGAcGGUCGAGCGCGgcgguuacGGGAAGGgguucaacgaCUGCGg -3'
miRNA:   3'- -CUuCCAGCUCGUGU--------UCCUUUC----------GAUGU- -5'
23141 3' -49.6 NC_005178.1 + 10324 0.73 0.473009
Target:  5'- cGAGGGcCGGGCGCGgAGGGgcgaagcgcgccGGGCUGCGc -3'
miRNA:   3'- -CUUCCaGCUCGUGU-UCCU------------UUCGAUGU- -5'
23141 3' -49.6 NC_005178.1 + 3240 0.74 0.440755
Target:  5'- cGAGGUCGGGCGCAuGGGuGAGCa--- -3'
miRNA:   3'- cUUCCAGCUCGUGU-UCCuUUCGaugu -5'
23141 3' -49.6 NC_005178.1 + 23040 0.74 0.440755
Target:  5'- uGGAuGcCGAGCGCAAGcGGAAGCUGCu -3'
miRNA:   3'- -CUUcCaGCUCGUGUUC-CUUUCGAUGu -5'
23141 3' -49.6 NC_005178.1 + 23984 1.1 0.001803
Target:  5'- aGAAGGUCGAGCACAAGGAAAGCUACAg -3'
miRNA:   3'- -CUUCCAGCUCGUGUUCCUUUCGAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.