miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23141 5' -53.5 NC_005178.1 + 17140 0.66 0.682128
Target:  5'- cGCGCAGCUuggCCagGUUGGUcgccugggcguccAGGGCCg -3'
miRNA:   3'- aUGCGUCGAa--GGgaUAGCCG-------------UUCUGG- -5'
23141 5' -53.5 NC_005178.1 + 37083 0.66 0.671797
Target:  5'- -uCGCuGGCgUCCCgGUCGGC--GACCu -3'
miRNA:   3'- auGCG-UCGaAGGGaUAGCCGuuCUGG- -5'
23141 5' -53.5 NC_005178.1 + 6741 0.66 0.660278
Target:  5'- aUGCGCcgAGCacugaUCCCcAUCGGCAucuuccuGGCCc -3'
miRNA:   3'- -AUGCG--UCGa----AGGGaUAGCCGUu------CUGG- -5'
23141 5' -53.5 NC_005178.1 + 16377 0.66 0.660278
Target:  5'- gGCgGCGGCgccuacgCCCUGg-GGCAGGuCCa -3'
miRNA:   3'- aUG-CGUCGaa-----GGGAUagCCGUUCuGG- -5'
23141 5' -53.5 NC_005178.1 + 37509 0.66 0.659125
Target:  5'- --aGCAGCUcggccgaUUCCUgcgggagggcAUCGGCAAgcuGACCg -3'
miRNA:   3'- augCGUCGA-------AGGGA----------UAGCCGUU---CUGG- -5'
23141 5' -53.5 NC_005178.1 + 9298 0.66 0.648731
Target:  5'- aUugGCGGCggCCagcgaggCGGCAGcGGCCu -3'
miRNA:   3'- -AugCGUCGaaGGgaua---GCCGUU-CUGG- -5'
23141 5' -53.5 NC_005178.1 + 35154 0.67 0.637167
Target:  5'- aACGCcagccGGCUggaggacgUCaCUGUCGGCcAGGCCg -3'
miRNA:   3'- aUGCG-----UCGA--------AGgGAUAGCCGuUCUGG- -5'
23141 5' -53.5 NC_005178.1 + 32082 0.67 0.623285
Target:  5'- gUGCGCaauaucGGCUaugCCCguuucgcgaaugGUCGGCcGGGCCg -3'
miRNA:   3'- -AUGCG------UCGAa--GGGa-----------UAGCCGuUCUGG- -5'
23141 5' -53.5 NC_005178.1 + 17853 0.67 0.614035
Target:  5'- aGCGCcuGCcgCCC--UCGGCGAGGuCCa -3'
miRNA:   3'- aUGCGu-CGaaGGGauAGCCGUUCU-GG- -5'
23141 5' -53.5 NC_005178.1 + 421 0.68 0.568063
Target:  5'- gGCGUAGC-UCCUggaccUCGGCGAGGa- -3'
miRNA:   3'- aUGCGUCGaAGGGau---AGCCGUUCUgg -5'
23141 5' -53.5 NC_005178.1 + 33560 0.68 0.554423
Target:  5'- gUGCGCAGCa--CCUGgggucggaacagCGGCcGGGCCu -3'
miRNA:   3'- -AUGCGUCGaagGGAUa-----------GCCGuUCUGG- -5'
23141 5' -53.5 NC_005178.1 + 4820 0.68 0.523003
Target:  5'- aUGCgGCAGCUaUCCacgGUCGGCcAGuCCa -3'
miRNA:   3'- -AUG-CGUCGA-AGGga-UAGCCGuUCuGG- -5'
23141 5' -53.5 NC_005178.1 + 27732 0.69 0.511945
Target:  5'- cGCGCAGCagCgCCUGgaccUGGCGAG-CCa -3'
miRNA:   3'- aUGCGUCGaaG-GGAUa---GCCGUUCuGG- -5'
23141 5' -53.5 NC_005178.1 + 18195 0.69 0.468757
Target:  5'- cUGCGCGGUggCgUCUAUgGGCcGGGCCa -3'
miRNA:   3'- -AUGCGUCGaaG-GGAUAgCCGuUCUGG- -5'
23141 5' -53.5 NC_005178.1 + 12768 0.7 0.458251
Target:  5'- cACGCGGCa--CCUGgaggaacgccUCGGCAAuGGCCu -3'
miRNA:   3'- aUGCGUCGaagGGAU----------AGCCGUU-CUGG- -5'
23141 5' -53.5 NC_005178.1 + 18616 0.7 0.444783
Target:  5'- cUACGCAGCUaUCCagcaGUUgggcggucaggcugGGCGAGGCCg -3'
miRNA:   3'- -AUGCGUCGA-AGGga--UAG--------------CCGUUCUGG- -5'
23141 5' -53.5 NC_005178.1 + 21411 0.7 0.437625
Target:  5'- cGgGCGGguaCUUCCCgagccggAUCGGC-AGACCg -3'
miRNA:   3'- aUgCGUC---GAAGGGa------UAGCCGuUCUGG- -5'
23141 5' -53.5 NC_005178.1 + 13321 0.7 0.417541
Target:  5'- gGCGCcgGGCUgcucgCgCUGUCGGUGAuGACCa -3'
miRNA:   3'- aUGCG--UCGAa----GgGAUAGCCGUU-CUGG- -5'
23141 5' -53.5 NC_005178.1 + 14508 0.71 0.369884
Target:  5'- --aGCAGCUUCCgCUugcgcUCGGCAuccaGGAUCg -3'
miRNA:   3'- augCGUCGAAGG-GAu----AGCCGU----UCUGG- -5'
23141 5' -53.5 NC_005178.1 + 8590 0.72 0.351891
Target:  5'- cGCGCAGggUCaCCUGgcgcaCGGCGAuGGCCg -3'
miRNA:   3'- aUGCGUCgaAG-GGAUa----GCCGUU-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.