Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 23142 | 3' | -65.7 | NC_005178.1 | + | 18138 | 0.66 | 0.179769 |
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Target: 5'- -aGGC-CGAGCAGCUCGGCugcGCgCCg- -3' miRNA: 3'- ugUCGcGCUCGUCGGGCCG---CGgGGag -5' |
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| 23142 | 3' | -65.7 | NC_005178.1 | + | 20751 | 0.66 | 0.179769 |
|
Target: 5'- aACAGCa-GAGC-GCCgGGCGUaCCUCg -3' miRNA: 3'- -UGUCGcgCUCGuCGGgCCGCGgGGAG- -5' |
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| 23142 | 3' | -65.7 | NC_005178.1 | + | 19190 | 0.66 | 0.157462 |
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Target: 5'- uACAGcCGCGuagaguGCcGCCaGGCGCUCCUg -3' miRNA: 3'- -UGUC-GCGCu-----CGuCGGgCCGCGGGGAg -5' |
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| 23142 | 3' | -65.7 | NC_005178.1 | + | 35643 | 0.66 | 0.153312 |
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Target: 5'- uCAaCGUGAGCcucGGCCUGGCGauaCUCCUCa -3' miRNA: 3'- uGUcGCGCUCG---UCGGGCCGC---GGGGAG- -5' |
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| 23142 | 3' | -65.7 | NC_005178.1 | + | 23448 | 0.66 | 0.153312 |
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Target: 5'- cCAGgGCGA-CGGCCagGGCGCCCg-- -3' miRNA: 3'- uGUCgCGCUcGUCGGg-CCGCGGGgag -5' |
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| 23142 | 3' | -65.7 | NC_005178.1 | + | 3000 | 0.66 | 0.157462 |
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Target: 5'- -gAGCGUGcGCAGCCUGGaGCgCUUCc -3' miRNA: 3'- ugUCGCGCuCGUCGGGCCgCGgGGAG- -5' |
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| 23142 | 3' | -65.7 | NC_005178.1 | + | 37492 | 0.66 | 0.161714 |
|
Target: 5'- cCAGCGCGAaugcaucgaGCAGCUCGGcCGaUUCCUg -3' miRNA: 3'- uGUCGCGCU---------CGUCGGGCC-GC-GGGGAg -5' |
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| 23142 | 3' | -65.7 | NC_005178.1 | + | 31243 | 0.66 | 0.170528 |
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Target: 5'- gACAGCaucguCGAGC-GCCUGaGCGCCUCg- -3' miRNA: 3'- -UGUCGc----GCUCGuCGGGC-CGCGGGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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