Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23142 | 3' | -65.7 | NC_005178.1 | + | 9561 | 0.7 | 0.084 |
|
Target: 5'- -aAGCGCGAGCGcgauGCCCuGCGCCgCg- -3' miRNA: 3'- ugUCGCGCUCGU----CGGGcCGCGGgGag -5' |
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| 23142 | 3' | -65.7 | NC_005178.1 | + | 9394 | 0.66 | 0.179769 |
|
Target: 5'- uACAGC-CGAGgcgccgaccguCAGCCCcugGGCGCCgCCaUCg -3' miRNA: 3'- -UGUCGcGCUC-----------GUCGGG---CCGCGG-GG-AG- -5' |
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| 23142 | 3' | -65.7 | NC_005178.1 | + | 9304 | 0.68 | 0.113511 |
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Target: 5'- gGCGGCcaGCGAggcggcaGCGGCCuggauagcggCGGCGCCgCUCa -3' miRNA: 3'- -UGUCG--CGCU-------CGUCGG----------GCCGCGGgGAG- -5' |
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| 23142 | 3' | -65.7 | NC_005178.1 | + | 7506 | 0.69 | 0.101978 |
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Target: 5'- gAUAGCGCGuGaauGGCCCGGCGCUg--- -3' miRNA: 3'- -UGUCGCGCuCg--UCGGGCCGCGGggag -5' |
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| 23142 | 3' | -65.7 | NC_005178.1 | + | 6237 | 0.67 | 0.130435 |
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Target: 5'- cCGGCGCGGcGCcaggcgcauAGCCCGGCGCUg--- -3' miRNA: 3'- uGUCGCGCU-CG---------UCGGGCCGCGGggag -5' |
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| 23142 | 3' | -65.7 | NC_005178.1 | + | 6062 | 0.67 | 0.149261 |
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Target: 5'- gACGGUGcCGAGgGGU--GGcCGCCCCUCg -3' miRNA: 3'- -UGUCGC-GCUCgUCGggCC-GCGGGGAG- -5' |
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| 23142 | 3' | -65.7 | NC_005178.1 | + | 3000 | 0.66 | 0.157462 |
|
Target: 5'- -gAGCGUGcGCAGCCUGGaGCgCUUCc -3' miRNA: 3'- ugUCGCGCuCGUCGGGCCgCGgGGAG- -5' |
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| 23142 | 3' | -65.7 | NC_005178.1 | + | 402 | 0.67 | 0.141451 |
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Target: 5'- uCGGUGCGAuaGGCCUGGCggcguaGCUCCUg -3' miRNA: 3'- uGUCGCGCUcgUCGGGCCG------CGGGGAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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