miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23142 5' -55.6 NC_005178.1 + 34593 0.66 0.59861
Target:  5'- ------gGCCggGCGAGUCGGUGaGCGg -3'
miRNA:   3'- cauaaugCGGgaCGCUCGGCUAC-CGC- -5'
23142 5' -55.6 NC_005178.1 + 1955 0.66 0.59861
Target:  5'- ------gGCCC-GUGAGCCGAaucuuuccgacgUGGCGc -3'
miRNA:   3'- cauaaugCGGGaCGCUCGGCU------------ACCGC- -5'
23142 5' -55.6 NC_005178.1 + 8248 0.66 0.595221
Target:  5'- gGUAgga-GCCCaccacgGCGAGCggguacggauauugCGAUGGCGg -3'
miRNA:   3'- -CAUaaugCGGGa-----CGCUCG--------------GCUACCGC- -5'
23142 5' -55.6 NC_005178.1 + 12229 0.66 0.587326
Target:  5'- ----aGCGCCUggccaaGCGGGCCGAcaGCGa -3'
miRNA:   3'- cauaaUGCGGGa-----CGCUCGGCUacCGC- -5'
23142 5' -55.6 NC_005178.1 + 10306 0.66 0.587326
Target:  5'- ----cACGUCCUgGCGgauAGCCGAgggccgGGCGc -3'
miRNA:   3'- cauaaUGCGGGA-CGC---UCGGCUa-----CCGC- -5'
23142 5' -55.6 NC_005178.1 + 3043 0.66 0.564887
Target:  5'- ----gGCGCCCUG-GuGCCGAaGGUc -3'
miRNA:   3'- cauaaUGCGGGACgCuCGGCUaCCGc -5'
23142 5' -55.6 NC_005178.1 + 9666 0.66 0.542678
Target:  5'- gGUGgcuuCGCCgaGCcGGCCGA-GGCGg -3'
miRNA:   3'- -CAUaau-GCGGgaCGcUCGGCUaCCGC- -5'
23142 5' -55.6 NC_005178.1 + 12905 0.67 0.509938
Target:  5'- ----gGCGCagUUGCuGGCCGGUGGUGg -3'
miRNA:   3'- cauaaUGCGg-GACGcUCGGCUACCGC- -5'
23142 5' -55.6 NC_005178.1 + 23697 0.67 0.488577
Target:  5'- ----cAUGCCg-GCaAGCCGGUGGCGc -3'
miRNA:   3'- cauaaUGCGGgaCGcUCGGCUACCGC- -5'
23142 5' -55.6 NC_005178.1 + 570 0.67 0.488577
Target:  5'- ---aUGCGCUCUGUGAGuuGAcuguugcaaugGGCGc -3'
miRNA:   3'- cauaAUGCGGGACGCUCggCUa----------CCGC- -5'
23142 5' -55.6 NC_005178.1 + 10350 0.68 0.457353
Target:  5'- ----cGCGCCgggCUGCGcuGGCCGAgcUGGUGg -3'
miRNA:   3'- cauaaUGCGG---GACGC--UCGGCU--ACCGC- -5'
23142 5' -55.6 NC_005178.1 + 13299 0.68 0.457353
Target:  5'- ----gGCGUaauaCUGCGGGUCGAggGGCGc -3'
miRNA:   3'- cauaaUGCGg---GACGCUCGGCUa-CCGC- -5'
23142 5' -55.6 NC_005178.1 + 5505 0.68 0.457353
Target:  5'- -----uCGCCaguUGCGAGaCGGUGGCGa -3'
miRNA:   3'- cauaauGCGGg--ACGCUCgGCUACCGC- -5'
23142 5' -55.6 NC_005178.1 + 2543 0.68 0.447184
Target:  5'- aGUGUguaGCUCUGCGAcagGCUGGUcGGCGc -3'
miRNA:   3'- -CAUAaugCGGGACGCU---CGGCUA-CCGC- -5'
23142 5' -55.6 NC_005178.1 + 28194 0.68 0.437141
Target:  5'- ----gGCGCCCUgGCGAcuGCUGgcGGCa -3'
miRNA:   3'- cauaaUGCGGGA-CGCU--CGGCuaCCGc -5'
23142 5' -55.6 NC_005178.1 + 14002 0.68 0.42723
Target:  5'- ----gGCGaagCCUGCGGGCUGcgGGCc -3'
miRNA:   3'- cauaaUGCg--GGACGCUCGGCuaCCGc -5'
23142 5' -55.6 NC_005178.1 + 11232 0.69 0.379748
Target:  5'- -cGUU-CGCCCUgGCGAgugacGCCGccAUGGCGg -3'
miRNA:   3'- caUAAuGCGGGA-CGCU-----CGGC--UACCGC- -5'
23142 5' -55.6 NC_005178.1 + 2118 0.69 0.379748
Target:  5'- ----gGCGCCCggucaGCGucaggcuGUCGGUGGCGg -3'
miRNA:   3'- cauaaUGCGGGa----CGCu------CGGCUACCGC- -5'
23142 5' -55.6 NC_005178.1 + 28117 0.71 0.280988
Target:  5'- -gGUUugGCCUggGCGGuggcaCCGAUGGCGg -3'
miRNA:   3'- caUAAugCGGGa-CGCUc----GGCUACCGC- -5'
23142 5' -55.6 NC_005178.1 + 25162 0.78 0.100013
Target:  5'- ------aGCCC-GCGAGCUGAUGGCGg -3'
miRNA:   3'- cauaaugCGGGaCGCUCGGCUACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.