Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23142 | 5' | -55.6 | NC_005178.1 | + | 34593 | 0.66 | 0.59861 |
Target: 5'- ------gGCCggGCGAGUCGGUGaGCGg -3' miRNA: 3'- cauaaugCGGgaCGCUCGGCUAC-CGC- -5' |
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23142 | 5' | -55.6 | NC_005178.1 | + | 1955 | 0.66 | 0.59861 |
Target: 5'- ------gGCCC-GUGAGCCGAaucuuuccgacgUGGCGc -3' miRNA: 3'- cauaaugCGGGaCGCUCGGCU------------ACCGC- -5' |
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23142 | 5' | -55.6 | NC_005178.1 | + | 8248 | 0.66 | 0.595221 |
Target: 5'- gGUAgga-GCCCaccacgGCGAGCggguacggauauugCGAUGGCGg -3' miRNA: 3'- -CAUaaugCGGGa-----CGCUCG--------------GCUACCGC- -5' |
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23142 | 5' | -55.6 | NC_005178.1 | + | 12229 | 0.66 | 0.587326 |
Target: 5'- ----aGCGCCUggccaaGCGGGCCGAcaGCGa -3' miRNA: 3'- cauaaUGCGGGa-----CGCUCGGCUacCGC- -5' |
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23142 | 5' | -55.6 | NC_005178.1 | + | 10306 | 0.66 | 0.587326 |
Target: 5'- ----cACGUCCUgGCGgauAGCCGAgggccgGGCGc -3' miRNA: 3'- cauaaUGCGGGA-CGC---UCGGCUa-----CCGC- -5' |
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23142 | 5' | -55.6 | NC_005178.1 | + | 3043 | 0.66 | 0.564887 |
Target: 5'- ----gGCGCCCUG-GuGCCGAaGGUc -3' miRNA: 3'- cauaaUGCGGGACgCuCGGCUaCCGc -5' |
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23142 | 5' | -55.6 | NC_005178.1 | + | 9666 | 0.66 | 0.542678 |
Target: 5'- gGUGgcuuCGCCgaGCcGGCCGA-GGCGg -3' miRNA: 3'- -CAUaau-GCGGgaCGcUCGGCUaCCGC- -5' |
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23142 | 5' | -55.6 | NC_005178.1 | + | 12905 | 0.67 | 0.509938 |
Target: 5'- ----gGCGCagUUGCuGGCCGGUGGUGg -3' miRNA: 3'- cauaaUGCGg-GACGcUCGGCUACCGC- -5' |
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23142 | 5' | -55.6 | NC_005178.1 | + | 23697 | 0.67 | 0.488577 |
Target: 5'- ----cAUGCCg-GCaAGCCGGUGGCGc -3' miRNA: 3'- cauaaUGCGGgaCGcUCGGCUACCGC- -5' |
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23142 | 5' | -55.6 | NC_005178.1 | + | 570 | 0.67 | 0.488577 |
Target: 5'- ---aUGCGCUCUGUGAGuuGAcuguugcaaugGGCGc -3' miRNA: 3'- cauaAUGCGGGACGCUCggCUa----------CCGC- -5' |
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23142 | 5' | -55.6 | NC_005178.1 | + | 10350 | 0.68 | 0.457353 |
Target: 5'- ----cGCGCCgggCUGCGcuGGCCGAgcUGGUGg -3' miRNA: 3'- cauaaUGCGG---GACGC--UCGGCU--ACCGC- -5' |
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23142 | 5' | -55.6 | NC_005178.1 | + | 5505 | 0.68 | 0.457353 |
Target: 5'- -----uCGCCaguUGCGAGaCGGUGGCGa -3' miRNA: 3'- cauaauGCGGg--ACGCUCgGCUACCGC- -5' |
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23142 | 5' | -55.6 | NC_005178.1 | + | 13299 | 0.68 | 0.457353 |
Target: 5'- ----gGCGUaauaCUGCGGGUCGAggGGCGc -3' miRNA: 3'- cauaaUGCGg---GACGCUCGGCUa-CCGC- -5' |
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23142 | 5' | -55.6 | NC_005178.1 | + | 2543 | 0.68 | 0.447184 |
Target: 5'- aGUGUguaGCUCUGCGAcagGCUGGUcGGCGc -3' miRNA: 3'- -CAUAaugCGGGACGCU---CGGCUA-CCGC- -5' |
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23142 | 5' | -55.6 | NC_005178.1 | + | 28194 | 0.68 | 0.437141 |
Target: 5'- ----gGCGCCCUgGCGAcuGCUGgcGGCa -3' miRNA: 3'- cauaaUGCGGGA-CGCU--CGGCuaCCGc -5' |
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23142 | 5' | -55.6 | NC_005178.1 | + | 14002 | 0.68 | 0.42723 |
Target: 5'- ----gGCGaagCCUGCGGGCUGcgGGCc -3' miRNA: 3'- cauaaUGCg--GGACGCUCGGCuaCCGc -5' |
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23142 | 5' | -55.6 | NC_005178.1 | + | 2118 | 0.69 | 0.379748 |
Target: 5'- ----gGCGCCCggucaGCGucaggcuGUCGGUGGCGg -3' miRNA: 3'- cauaaUGCGGGa----CGCu------CGGCUACCGC- -5' |
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23142 | 5' | -55.6 | NC_005178.1 | + | 11232 | 0.69 | 0.379748 |
Target: 5'- -cGUU-CGCCCUgGCGAgugacGCCGccAUGGCGg -3' miRNA: 3'- caUAAuGCGGGA-CGCU-----CGGC--UACCGC- -5' |
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23142 | 5' | -55.6 | NC_005178.1 | + | 28117 | 0.71 | 0.280988 |
Target: 5'- -gGUUugGCCUggGCGGuggcaCCGAUGGCGg -3' miRNA: 3'- caUAAugCGGGa-CGCUc----GGCUACCGC- -5' |
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23142 | 5' | -55.6 | NC_005178.1 | + | 25162 | 0.78 | 0.100013 |
Target: 5'- ------aGCCC-GCGAGCUGAUGGCGg -3' miRNA: 3'- cauaaugCGGGaCGCUCGGCUACCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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