miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23143 5' -57.2 NC_005178.1 + 8597 0.66 0.506493
Target:  5'- uGCACCAcGCGcucGCCGGAagucuCCGGCc- -3'
miRNA:   3'- cUGUGGU-CGUu--CGGCCUau---GGCCGcu -5'
23143 5' -57.2 NC_005178.1 + 34751 0.66 0.506493
Target:  5'- gGGCAUCGGCGA-CCaGuUGCUGGCGGu -3'
miRNA:   3'- -CUGUGGUCGUUcGGcCuAUGGCCGCU- -5'
23143 5' -57.2 NC_005178.1 + 28289 0.66 0.495906
Target:  5'- gGugACCGGCGcuGCgGGAgcUGCCGGgGc -3'
miRNA:   3'- -CugUGGUCGUu-CGgCCU--AUGGCCgCu -5'
23143 5' -57.2 NC_005178.1 + 30648 0.66 0.495906
Target:  5'- aGCACCAGCGccugGGUCGGuuauUGCUuccgGGUGAu -3'
miRNA:   3'- cUGUGGUCGU----UCGGCCu---AUGG----CCGCU- -5'
23143 5' -57.2 NC_005178.1 + 32430 0.66 0.48542
Target:  5'- aGACACUGGCuGGGCCGGAacCCaGCu- -3'
miRNA:   3'- -CUGUGGUCG-UUCGGCCUauGGcCGcu -5'
23143 5' -57.2 NC_005178.1 + 19908 0.66 0.48542
Target:  5'- -uCACCu---GGCCGGucuUGCCGGCGc -3'
miRNA:   3'- cuGUGGucguUCGGCCu--AUGGCCGCu -5'
23143 5' -57.2 NC_005178.1 + 35154 0.66 0.47918
Target:  5'- aACGCCAGCcGGCUGGAggacgucacugucgGCCaGGCc- -3'
miRNA:   3'- cUGUGGUCGuUCGGCCUa-------------UGG-CCGcu -5'
23143 5' -57.2 NC_005178.1 + 5296 0.66 0.475041
Target:  5'- --gGCCGGCGcgAGCUGGA-ACUGGCcGAc -3'
miRNA:   3'- cugUGGUCGU--UCGGCCUaUGGCCG-CU- -5'
23143 5' -57.2 NC_005178.1 + 10222 0.66 0.475041
Target:  5'- gGACAU--GCu-GCCGGAUACCGuccGCGAc -3'
miRNA:   3'- -CUGUGguCGuuCGGCCUAUGGC---CGCU- -5'
23143 5' -57.2 NC_005178.1 + 35391 0.66 0.464774
Target:  5'- aACACCAGCGAGggccaaCUGGcc-CCGGCGc -3'
miRNA:   3'- cUGUGGUCGUUC------GGCCuauGGCCGCu -5'
23143 5' -57.2 NC_005178.1 + 5649 0.66 0.464774
Target:  5'- aACGCCgauGGCAAGCCaucccagcagGGAUACaccaccgaGGCGGu -3'
miRNA:   3'- cUGUGG---UCGUUCGG----------CCUAUGg-------CCGCU- -5'
23143 5' -57.2 NC_005178.1 + 31162 0.66 0.461717
Target:  5'- aGGCuCCugGGCGAGCCGGAccugguccuggucaUcACCGGCa- -3'
miRNA:   3'- -CUGuGG--UCGUUCGGCCU--------------A-UGGCCGcu -5'
23143 5' -57.2 NC_005178.1 + 2864 0.66 0.461717
Target:  5'- cGCACCGGCuacAGCCGGAaacgcuccauUACCcugaugcuggacauGGCGc -3'
miRNA:   3'- cUGUGGUCGu--UCGGCCU----------AUGG--------------CCGCu -5'
23143 5' -57.2 NC_005178.1 + 28941 0.66 0.454624
Target:  5'- -gUACCuu--GGCCGGAgacuuCCGGCGAg -3'
miRNA:   3'- cuGUGGucguUCGGCCUau---GGCCGCU- -5'
23143 5' -57.2 NC_005178.1 + 23463 0.66 0.452608
Target:  5'- gGGCGcCCGGCGcgaAGCCGGcccgcugcucgGCCGGCu- -3'
miRNA:   3'- -CUGU-GGUCGU---UCGGCCua---------UGGCCGcu -5'
23143 5' -57.2 NC_005178.1 + 14447 0.67 0.444595
Target:  5'- gGGCGCCGGgGuGCCGGA-GCUGGUc- -3'
miRNA:   3'- -CUGUGGUCgUuCGGCCUaUGGCCGcu -5'
23143 5' -57.2 NC_005178.1 + 33775 0.67 0.434692
Target:  5'- aGACAUCAGC-GGCauGGUGCCgcccuuGGCGAu -3'
miRNA:   3'- -CUGUGGUCGuUCGgcCUAUGG------CCGCU- -5'
23143 5' -57.2 NC_005178.1 + 25402 0.67 0.434692
Target:  5'- --gACCAGCAGGCggccCGGAUcaaGGCGAu -3'
miRNA:   3'- cugUGGUCGUUCG----GCCUAuggCCGCU- -5'
23143 5' -57.2 NC_005178.1 + 25153 0.67 0.434692
Target:  5'- -cCGCCAGCAAGCCcGcGAgcugaUGGCGGu -3'
miRNA:   3'- cuGUGGUCGUUCGG-C-CUaug--GCCGCU- -5'
23143 5' -57.2 NC_005178.1 + 19543 0.67 0.424917
Target:  5'- cACGCCAGCcugGAGCUGGGcACCcugGGCa- -3'
miRNA:   3'- cUGUGGUCG---UUCGGCCUaUGG---CCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.