miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23144 3' -54.1 NC_005178.1 + 24665 1.13 0.000425
Target:  5'- aCAGCCUGGAAGUUCUGUUCCCCGACCg -3'
miRNA:   3'- -GUCGGACCUUCAAGACAAGGGGCUGG- -5'
23144 3' -54.1 NC_005178.1 + 31595 0.7 0.458278
Target:  5'- cCGGCCUGGAc---CUGguccgCCCCGuCCa -3'
miRNA:   3'- -GUCGGACCUucaaGACaa---GGGGCuGG- -5'
23144 3' -54.1 NC_005178.1 + 31215 0.7 0.458278
Target:  5'- -cGCCUGGAcGUUCg---CCCCgGACUg -3'
miRNA:   3'- guCGGACCUuCAAGacaaGGGG-CUGG- -5'
23144 3' -54.1 NC_005178.1 + 3008 0.69 0.479076
Target:  5'- gCAGCCUGG-AGcgCU--UCCUgGACCa -3'
miRNA:   3'- -GUCGGACCuUCaaGAcaAGGGgCUGG- -5'
23144 3' -54.1 NC_005178.1 + 23255 0.69 0.511106
Target:  5'- cCGGCCUucaGGAcGUUUcgGgcgUCCCCGAUCu -3'
miRNA:   3'- -GUCGGA---CCUuCAAGa-Ca--AGGGGCUGG- -5'
23144 3' -54.1 NC_005178.1 + 15518 0.67 0.586567
Target:  5'- cCGGUCUGGccaaaGAGUUCgccaaccaCCCGGCCa -3'
miRNA:   3'- -GUCGGACC-----UUCAAGacaag---GGGCUGG- -5'
23144 3' -54.1 NC_005178.1 + 4304 0.66 0.657035
Target:  5'- -uGcCCUGGAaauGGaugcgccgCUGUccaUCCCCGGCCu -3'
miRNA:   3'- guC-GGACCU---UCaa------GACA---AGGGGCUGG- -5'
23144 3' -54.1 NC_005178.1 + 21955 0.75 0.2151
Target:  5'- cUAGCCUGGAGGUgcccCUGcucggCCUCGAUCa -3'
miRNA:   3'- -GUCGGACCUUCAa---GACaa---GGGGCUGG- -5'
23144 3' -54.1 NC_005178.1 + 1505 0.73 0.311728
Target:  5'- gGGCCaaGcGGUUCUGguucgCCCCGGCCc -3'
miRNA:   3'- gUCGGacCuUCAAGACaa---GGGGCUGG- -5'
23144 3' -54.1 NC_005178.1 + 12229 0.72 0.327955
Target:  5'- gCGGCUUGGAucgagUCggacaGUUCCUCGACCu -3'
miRNA:   3'- -GUCGGACCUuca--AGa----CAAGGGGCUGG- -5'
23144 3' -54.1 NC_005178.1 + 8793 0.7 0.448061
Target:  5'- aCGGCCUGGcGGUUCUuGUUCagCCaGACg -3'
miRNA:   3'- -GUCGGACCuUCAAGA-CAAGg-GG-CUGg -5'
23144 3' -54.1 NC_005178.1 + 30443 0.67 0.622894
Target:  5'- cCGGCCgcUGGAGGUacucgCUGca-CUCGACCg -3'
miRNA:   3'- -GUCGG--ACCUUCAa----GACaagGGGCUGG- -5'
23144 3' -54.1 NC_005178.1 + 2196 0.67 0.63428
Target:  5'- gGGCCUGGAGcgUCacg-CCCUGGCUg -3'
miRNA:   3'- gUCGGACCUUcaAGacaaGGGGCUGG- -5'
23144 3' -54.1 NC_005178.1 + 26916 0.66 0.657035
Target:  5'- cCGGCCgGGgcGU--UGcgCCCCGGCUu -3'
miRNA:   3'- -GUCGGaCCuuCAagACaaGGGGCUGG- -5'
23144 3' -54.1 NC_005178.1 + 19547 0.66 0.690952
Target:  5'- cCAGCCUGGAg---CUGggcaCCCUGGgCa -3'
miRNA:   3'- -GUCGGACCUucaaGACaa--GGGGCUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.