miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23145 3' -59.4 NC_005178.1 + 25068 1.09 0.000217
Target:  5'- cAGCAGGACACCAGCGCGACCAGCUCGg -3'
miRNA:   3'- -UCGUCCUGUGGUCGCGCUGGUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 2901 0.66 0.383168
Target:  5'- uGCuGGACAUgGcGCGCcucGGCCAGgUCGa -3'
miRNA:   3'- uCGuCCUGUGgU-CGCG---CUGGUCgAGC- -5'
23145 3' -59.4 NC_005178.1 + 6481 0.66 0.365501
Target:  5'- gAGCuGGugAgCCAGUuCGGCCAGgUCa -3'
miRNA:   3'- -UCGuCCugU-GGUCGcGCUGGUCgAGc -5'
23145 3' -59.4 NC_005178.1 + 31455 0.66 0.35688
Target:  5'- -cCAGGA-ACC-GCugGCGGCCGGCUCGc -3'
miRNA:   3'- ucGUCCUgUGGuCG--CGCUGGUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 36073 0.66 0.35688
Target:  5'- uGguGGGCaACgGGUGCGACCAcgGCUa- -3'
miRNA:   3'- uCguCCUG-UGgUCGCGCUGGU--CGAgc -5'
23145 3' -59.4 NC_005178.1 + 17328 0.67 0.348404
Target:  5'- cGGCGGGGC-CgAG-GuCGcCCAGCUCGg -3'
miRNA:   3'- -UCGUCCUGuGgUCgC-GCuGGUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 37529 0.67 0.348404
Target:  5'- cGGgAGGGCAUCGGCaaGCuGACC-GCUCu -3'
miRNA:   3'- -UCgUCCUGUGGUCG--CG-CUGGuCGAGc -5'
23145 3' -59.4 NC_005178.1 + 13125 0.67 0.331886
Target:  5'- uGgAGGuGCuCCAGCGCcuGGCCAGCUUc -3'
miRNA:   3'- uCgUCC-UGuGGUCGCG--CUGGUCGAGc -5'
23145 3' -59.4 NC_005178.1 + 25525 0.67 0.31595
Target:  5'- uGGCAGGaaaGCGCCcguGCGCaAUCGGCgUCGa -3'
miRNA:   3'- -UCGUCC---UGUGGu--CGCGcUGGUCG-AGC- -5'
23145 3' -59.4 NC_005178.1 + 5341 0.68 0.271639
Target:  5'- gAGCuGuACACCGGUGCGGCCccgAGCcCGa -3'
miRNA:   3'- -UCGuCcUGUGGUCGCGCUGG---UCGaGC- -5'
23145 3' -59.4 NC_005178.1 + 12203 0.77 0.065773
Target:  5'- -cCAGGACACCAGCGCGGcucuuuuCCAGCg-- -3'
miRNA:   3'- ucGUCCUGUGGUCGCGCU-------GGUCGagc -5'
23145 3' -59.4 NC_005178.1 + 12672 0.75 0.0933
Target:  5'- uGGCGGGugGCCugguuGCcuGCGGCCuGCUCGc -3'
miRNA:   3'- -UCGUCCugUGGu----CG--CGCUGGuCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 23457 0.74 0.104596
Target:  5'- cGGcCAGGGCGcCCGGCGCGaaGCCGGCcCGc -3'
miRNA:   3'- -UC-GUCCUGU-GGUCGCGC--UGGUCGaGC- -5'
23145 3' -59.4 NC_005178.1 + 33061 0.73 0.121895
Target:  5'- cGGCAGGugGCCAacuGCggguuuauccggguuGCGACgGGCUCGc -3'
miRNA:   3'- -UCGUCCugUGGU---CG---------------CGCUGgUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 30587 0.71 0.16199
Target:  5'- cGGCAGcGACACCuGGCGCGuguacccgcugcuCCAGCgCGg -3'
miRNA:   3'- -UCGUC-CUGUGG-UCGCGCu------------GGUCGaGC- -5'
23145 3' -59.4 NC_005178.1 + 24563 0.7 0.21415
Target:  5'- uGCuGGACACCAGCaagccggauaccgGCGACCugGGCcgcuUCGg -3'
miRNA:   3'- uCGuCCUGUGGUCG-------------CGCUGG--UCG----AGC- -5'
23145 3' -59.4 NC_005178.1 + 36477 0.69 0.249471
Target:  5'- cGGCGGGACggcgggcaacaucaACCAGCGCGuCCAagauuuGCUa- -3'
miRNA:   3'- -UCGUCCUG--------------UGGUCGCGCuGGU------CGAgc -5'
23145 3' -59.4 NC_005178.1 + 13260 0.66 0.392211
Target:  5'- cAGCAguuGGACcucGCCguaGGCGCcAUCGGCUCGc -3'
miRNA:   3'- -UCGU---CCUG---UGG---UCGCGcUGGUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 14853 0.75 0.085597
Target:  5'- cGGCAGcGAC-CCGGCGau-CCAGCUCGg -3'
miRNA:   3'- -UCGUC-CUGuGGUCGCgcuGGUCGAGC- -5'
23145 3' -59.4 NC_005178.1 + 30494 0.73 0.120527
Target:  5'- gGGCcGGGCACucaaugcggcuCAGCGCGGCCAggacacgacGCUCGa -3'
miRNA:   3'- -UCGuCCUGUG-----------GUCGCGCUGGU---------CGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.