Results 41 - 59 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23145 | 3' | -59.4 | NC_005178.1 | + | 14853 | 0.75 | 0.085597 |
Target: 5'- cGGCAGcGAC-CCGGCGau-CCAGCUCGg -3' miRNA: 3'- -UCGUC-CUGuGGUCGCgcuGGUCGAGC- -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 30494 | 0.73 | 0.120527 |
Target: 5'- gGGCcGGGCACucaaugcggcuCAGCGCGGCCAggacacgacGCUCGa -3' miRNA: 3'- -UCGuCCUGUG-----------GUCGCGCUGGU---------CGAGC- -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 34507 | 0.73 | 0.131141 |
Target: 5'- cGGCGGaccuucGGCACCAGgGCG-CCAcGCUCGg -3' miRNA: 3'- -UCGUC------CUGUGGUCgCGCuGGU-CGAGC- -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 27872 | 0.73 | 0.131141 |
Target: 5'- gAGCaAGGugACC-GCcuCGGCCGGCUCGg -3' miRNA: 3'- -UCG-UCCugUGGuCGc-GCUGGUCGAGC- -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 3961 | 0.73 | 0.134867 |
Target: 5'- gAGCGcGuCGCCGGuCGCGACCAGCacgUCGg -3' miRNA: 3'- -UCGUcCuGUGGUC-GCGCUGGUCG---AGC- -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 19477 | 0.7 | 0.192883 |
Target: 5'- cGGCAGGuuCGCCAGCugcucgcgaGCGACCGGgCUg- -3' miRNA: 3'- -UCGUCCu-GUGGUCG---------CGCUGGUC-GAgc -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 20828 | 0.7 | 0.203548 |
Target: 5'- cGCAGcGAUgcgaggACCAGgGCG-CCGGCUCa -3' miRNA: 3'- uCGUC-CUG------UGGUCgCGCuGGUCGAGc -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 14314 | 0.7 | 0.203548 |
Target: 5'- aGGCcGGGCACCucGGCGCGGaugcGCUCGa -3' miRNA: 3'- -UCGuCCUGUGG--UCGCGCUggu-CGAGC- -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 24881 | 0.7 | 0.218173 |
Target: 5'- cGCAGGcaaccaggccaccCGCCAGCGCG-CCGGC-CGc -3' miRNA: 3'- uCGUCCu------------GUGGUCGCGCuGGUCGaGC- -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 22438 | 0.68 | 0.270945 |
Target: 5'- gGGCAGGuacuggacagcccGCcuugGCCgAGCGCuucACCAGCUCGg -3' miRNA: 3'- -UCGUCC-------------UG----UGG-UCGCGc--UGGUCGAGC- -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 25242 | 0.69 | 0.232462 |
Target: 5'- cAGCAGGAaagcggcaGgCAGCGCGAucaCCAGCgguuUCGg -3' miRNA: 3'- -UCGUCCUg-------UgGUCGCGCU---GGUCG----AGC- -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 30638 | 0.69 | 0.238645 |
Target: 5'- uGCGGGcCACCucAGCgGCGAgCAGCUgGa -3' miRNA: 3'- uCGUCCuGUGG--UCG-CGCUgGUCGAgC- -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 26949 | 0.69 | 0.244965 |
Target: 5'- aGGguGGAUugCuGCGguGCCGGCUCGc -3' miRNA: 3'- -UCguCCUGugGuCGCgcUGGUCGAGC- -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 1612 | 0.69 | 0.251423 |
Target: 5'- cGCAGGAagucaucCCAGCGCaacaugcgGAUCAGUUCGc -3' miRNA: 3'- uCGUCCUgu-----GGUCGCG--------CUGGUCGAGC- -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 37024 | 0.69 | 0.256026 |
Target: 5'- cGCAGGGCACgguuccuggaccgaCGGCGCcACCGuGCUUGu -3' miRNA: 3'- uCGUCCUGUG--------------GUCGCGcUGGU-CGAGC- -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 9363 | 0.68 | 0.264759 |
Target: 5'- cAGCAGu-CGCCAGgGCG-CCGGC-CGa -3' miRNA: 3'- -UCGUCcuGUGGUCgCGCuGGUCGaGC- -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 25736 | 0.68 | 0.264759 |
Target: 5'- cGCGGu-CACCAGgGCGGCCAGggUGu -3' miRNA: 3'- uCGUCcuGUGGUCgCGCUGGUCgaGC- -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 27279 | 0.68 | 0.264759 |
Target: 5'- uGCucGACuaccACCAGCGUGGCCGGCa-- -3' miRNA: 3'- uCGucCUG----UGGUCGCGCUGGUCGagc -5' |
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23145 | 3' | -59.4 | NC_005178.1 | + | 2561 | 0.68 | 0.264759 |
Target: 5'- aGGCuGGuCggcgccucgGCCAGCGCGGCCAaguaggacgcGCUCa -3' miRNA: 3'- -UCGuCCuG---------UGGUCGCGCUGGU----------CGAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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