miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23146 3' -54.3 NC_005178.1 + 9634 0.66 0.639826
Target:  5'- cGGCUGAUGcacucgaucugaucuGCG--CGGCCGgUGGCUUCg -3'
miRNA:   3'- -UCGACUAC---------------CGCcaGUUGGU-ACCGAAG- -5'
23146 3' -54.3 NC_005178.1 + 34764 0.66 0.635196
Target:  5'- cAGUUGcUGGCGGuugguuUCGACCAgGGCc-- -3'
miRNA:   3'- -UCGACuACCGCC------AGUUGGUaCCGaag -5'
23146 3' -54.3 NC_005178.1 + 10278 0.66 0.623619
Target:  5'- cGCUGGUGGUaGUCGAgCAgcucGGCggCa -3'
miRNA:   3'- uCGACUACCGcCAGUUgGUa---CCGaaG- -5'
23146 3' -54.3 NC_005178.1 + 15291 0.66 0.623619
Target:  5'- uGGCgGGccagccUGGCGGUCGGCU-UGGCg-- -3'
miRNA:   3'- -UCGaCU------ACCGCCAGUUGGuACCGaag -5'
23146 3' -54.3 NC_005178.1 + 35957 0.66 0.61205
Target:  5'- cAGCUcg-GGCGGgacUCGACCA-GGCgUCg -3'
miRNA:   3'- -UCGAcuaCCGCC---AGUUGGUaCCGaAG- -5'
23146 3' -54.3 NC_005178.1 + 24955 0.66 0.6005
Target:  5'- uGCUGGucUGGUGGgcagcCAACCAgGGUUUUu -3'
miRNA:   3'- uCGACU--ACCGCCa----GUUGGUaCCGAAG- -5'
23146 3' -54.3 NC_005178.1 + 29479 0.66 0.587831
Target:  5'- aAGC-GAUGGU-GUCGGCCAUGucacugcaccuccGCUUCg -3'
miRNA:   3'- -UCGaCUACCGcCAGUUGGUAC-------------CGAAG- -5'
23146 3' -54.3 NC_005178.1 + 10099 0.67 0.577501
Target:  5'- aGGCUGAUGcGCuGGgCcGCCGUGGUg-- -3'
miRNA:   3'- -UCGACUAC-CG-CCaGuUGGUACCGaag -5'
23146 3' -54.3 NC_005178.1 + 15092 0.67 0.543399
Target:  5'- gAGCUGGUGaaGCGcUCGGCCAaGGCg-- -3'
miRNA:   3'- -UCGACUAC--CGCcAGUUGGUaCCGaag -5'
23146 3' -54.3 NC_005178.1 + 4267 0.67 0.543399
Target:  5'- ------aGGCGGUCGGCUugGGCUUCu -3'
miRNA:   3'- ucgacuaCCGCCAGUUGGuaCCGAAG- -5'
23146 3' -54.3 NC_005178.1 + 2135 0.67 0.532173
Target:  5'- aGGCUGucgGUGGCGGcCAgcGCCggGGCc-- -3'
miRNA:   3'- -UCGAC---UACCGCCaGU--UGGuaCCGaag -5'
23146 3' -54.3 NC_005178.1 + 1676 0.68 0.506687
Target:  5'- uGCUGAccaacUGGCuGGUCGAUgugcguggcggccgCGUGGCUUa -3'
miRNA:   3'- uCGACU-----ACCG-CCAGUUG--------------GUACCGAAg -5'
23146 3' -54.3 NC_005178.1 + 17180 0.68 0.466842
Target:  5'- cGGCUucagGGCGGUCAggGCCGcaaUGGCcUCu -3'
miRNA:   3'- -UCGAcua-CCGCCAGU--UGGU---ACCGaAG- -5'
23146 3' -54.3 NC_005178.1 + 36070 0.7 0.36816
Target:  5'- cGCUGGUGGgcaaCGGgugCGACCAcGGCUa- -3'
miRNA:   3'- uCGACUACC----GCCa--GUUGGUaCCGAag -5'
23146 3' -54.3 NC_005178.1 + 28391 0.7 0.359109
Target:  5'- aGGgUGAUGGUGuauaCGGCCAUGGCUa- -3'
miRNA:   3'- -UCgACUACCGCca--GUUGGUACCGAag -5'
23146 3' -54.3 NC_005178.1 + 28327 0.71 0.350214
Target:  5'- uGGCUGGUGGCGGga----GUGGCUg- -3'
miRNA:   3'- -UCGACUACCGCCaguuggUACCGAag -5'
23146 3' -54.3 NC_005178.1 + 6547 0.71 0.316219
Target:  5'- cGCUcGAUGGCGGUCAG-CGUGcGCg-- -3'
miRNA:   3'- uCGA-CUACCGCCAGUUgGUAC-CGaag -5'
23146 3' -54.3 NC_005178.1 + 25169 1.11 0.000466
Target:  5'- gAGCUGAUGGCGGUCAACCAUGGCUUCg -3'
miRNA:   3'- -UCGACUACCGCCAGUUGGUACCGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.