Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 23146 | 5' | -50.6 | NC_005178.1 | + | 36270 | 0.66 | 0.850225 |
|
Target: 5'- uCUG-AGCGAUucggacgcUGCCGCUUcgGGUUg- -3' miRNA: 3'- -GACaUCGCUA--------ACGGCGGAuaCUAGuc -5' |
|||||||
| 23146 | 5' | -50.6 | NC_005178.1 | + | 13037 | 0.66 | 0.84098 |
|
Target: 5'- ---cGGCGAcggugUUGCCGUCgcUGAUCAa -3' miRNA: 3'- gacaUCGCU-----AACGGCGGauACUAGUc -5' |
|||||||
| 23146 | 5' | -50.6 | NC_005178.1 | + | 11375 | 0.66 | 0.811778 |
|
Target: 5'- --cUGGUGAUUGCCggucugcccGCCUGguggcUGAUCGGu -3' miRNA: 3'- gacAUCGCUAACGG---------CGGAU-----ACUAGUC- -5' |
|||||||
| 23146 | 5' | -50.6 | NC_005178.1 | + | 21210 | 0.67 | 0.769878 |
|
Target: 5'- uCUGgcUGGUGAgcgUGCCGCCcagGAUCGc -3' miRNA: 3'- -GAC--AUCGCUa--ACGGCGGauaCUAGUc -5' |
|||||||
| 23146 | 5' | -50.6 | NC_005178.1 | + | 16649 | 0.68 | 0.747896 |
|
Target: 5'- cCUGgAGCGGggugUUGCgGUCgGUGGUCAGg -3' miRNA: 3'- -GACaUCGCU----AACGgCGGaUACUAGUC- -5' |
|||||||
| 23146 | 5' | -50.6 | NC_005178.1 | + | 33665 | 0.7 | 0.620334 |
|
Target: 5'- aUGUGGCGGcgGCgGCCgGUGuUCGGg -3' miRNA: 3'- gACAUCGCUaaCGgCGGaUACuAGUC- -5' |
|||||||
| 23146 | 5' | -50.6 | NC_005178.1 | + | 25205 | 1.08 | 0.001866 |
|
Target: 5'- uCUGUAGCGAUUGCCGCCUAUGAUCAGc -3' miRNA: 3'- -GACAUCGCUAACGGCGGAUACUAGUC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home