miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23147 3' -59.4 NC_005178.1 + 23688 0.66 0.397782
Target:  5'- cGCUgGCCuucGGGUCGGGGucGAaaccugcgaccUCGGCCu -3'
miRNA:   3'- aCGA-CGGuc-CCCAGCUCC--CU-----------AGCUGG- -5'
23147 3' -59.4 NC_005178.1 + 6741 0.66 0.397782
Target:  5'- cGCguagacGCCGGcccaGGUCGAGGccgCGACCg -3'
miRNA:   3'- aCGa-----CGGUCc---CCAGCUCCcuaGCUGG- -5'
23147 3' -59.4 NC_005178.1 + 21060 0.66 0.397782
Target:  5'- gGUUGCCGGaGcGGUUGAGgaccaGGAggGGCCa -3'
miRNA:   3'- aCGACGGUC-C-CCAGCUC-----CCUagCUGG- -5'
23147 3' -59.4 NC_005178.1 + 28307 0.66 0.397782
Target:  5'- aGCUGCC-GGGGcCGcuGGAgUGGCUg -3'
miRNA:   3'- aCGACGGuCCCCaGCucCCUaGCUGG- -5'
23147 3' -59.4 NC_005178.1 + 8575 0.66 0.397782
Target:  5'- cGCccagGCCAGGGGcgCGcAGGG-UC-ACCu -3'
miRNA:   3'- aCGa---CGGUCCCCa-GC-UCCCuAGcUGG- -5'
23147 3' -59.4 NC_005178.1 + 26464 0.66 0.388742
Target:  5'- cGCUGCCGGccgaGGUgGAugcGGGAUCaGGCa -3'
miRNA:   3'- aCGACGGUCc---CCAgCU---CCCUAG-CUGg -5'
23147 3' -59.4 NC_005178.1 + 33209 0.66 0.386056
Target:  5'- aGUUGCuCGGGGGUgaucgugccgaggcCG-GGGAUgGACa -3'
miRNA:   3'- aCGACG-GUCCCCA--------------GCuCCCUAgCUGg -5'
23147 3' -59.4 NC_005178.1 + 21404 0.67 0.371071
Target:  5'- gGCgUGCCGGGcGGguacuuccCGAGccGGAUCGGCa -3'
miRNA:   3'- aCG-ACGGUCC-CCa-------GCUC--CCUAGCUGg -5'
23147 3' -59.4 NC_005178.1 + 16657 0.67 0.371071
Target:  5'- cGCUGCCagccaauggcgAGGcGGUCcuGGGcGAUCaGGCCg -3'
miRNA:   3'- aCGACGG-----------UCC-CCAGc-UCC-CUAG-CUGG- -5'
23147 3' -59.4 NC_005178.1 + 25365 0.67 0.353955
Target:  5'- gGCUgGCCGGGagcuguccGGuUUGGGGGAgacagcCGACCa -3'
miRNA:   3'- aCGA-CGGUCC--------CC-AGCUCCCUa-----GCUGG- -5'
23147 3' -59.4 NC_005178.1 + 7822 0.68 0.28398
Target:  5'- uUGCguagaGCCAGGGGUUGccGGAgCG-CCa -3'
miRNA:   3'- -ACGa----CGGUCCCCAGCucCCUaGCuGG- -5'
23147 3' -59.4 NC_005178.1 + 27497 0.7 0.21957
Target:  5'- aGCU-CCAGGGG-CGAuGGGcgCuGGCCa -3'
miRNA:   3'- aCGAcGGUCCCCaGCU-CCCuaG-CUGG- -5'
23147 3' -59.4 NC_005178.1 + 31472 0.7 0.208287
Target:  5'- gUGgUGgUAGGuGUCGAGGGG-CGGCCa -3'
miRNA:   3'- -ACgACgGUCCcCAGCUCCCUaGCUGG- -5'
23147 3' -59.4 NC_005178.1 + 25748 1.1 0.000193
Target:  5'- aUGCUGCCAGGGGUCGAGGGAUCGACCc -3'
miRNA:   3'- -ACGACGGUCCCCAGCUCCCUAGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.