Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23147 | 5' | -54.6 | NC_005178.1 | + | 4287 | 0.68 | 0.478199 |
Target: 5'- uGCGGCUU-CGGCGCCAAGaccuuggaCAGGAu -3' miRNA: 3'- -UGCUGGAuGUUGCGGUUCgag-----GUCCU- -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 17996 | 0.69 | 0.467706 |
Target: 5'- uGCGGCUgccCAGggUGCCcAGCUCCAGGc -3' miRNA: 3'- -UGCUGGau-GUU--GCGGuUCGAGGUCCu -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 7284 | 0.69 | 0.467706 |
Target: 5'- uGCGcACCUucaACGACGCCGcccggcuGCUCCAGc- -3' miRNA: 3'- -UGC-UGGA---UGUUGCGGUu------CGAGGUCcu -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 30771 | 0.69 | 0.467706 |
Target: 5'- cCGACCaggaucaGCAGCagGCCGAGggCCAGGAa -3' miRNA: 3'- uGCUGGa------UGUUG--CGGUUCgaGGUCCU- -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 20946 | 0.69 | 0.467706 |
Target: 5'- uUGACCgGCAccugACGCCcAGCUugaCCAGGGg -3' miRNA: 3'- uGCUGGaUGU----UGCGGuUCGA---GGUCCU- -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 9659 | 0.69 | 0.457332 |
Target: 5'- cGCGGCCggugGCuuCGCCGAGCcggCCgAGGc -3' miRNA: 3'- -UGCUGGa---UGuuGCGGUUCGa--GG-UCCu -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 9322 | 0.69 | 0.447083 |
Target: 5'- aGCGGCCUggauagcgGCGGCGCC--GCU-CAGGAg -3' miRNA: 3'- -UGCUGGA--------UGUUGCGGuuCGAgGUCCU- -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 26115 | 0.69 | 0.430955 |
Target: 5'- uCGGCCaACAACGCCAagacggcuaugguggGGCUCagcGGAg -3' miRNA: 3'- uGCUGGaUGUUGCGGU---------------UCGAGgu-CCU- -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 29635 | 0.69 | 0.426977 |
Target: 5'- aGCGGauuagcccCUUGCuGCGCaguAGCUCCAGGAc -3' miRNA: 3'- -UGCU--------GGAUGuUGCGgu-UCGAGGUCCU- -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 13268 | 0.69 | 0.417126 |
Target: 5'- -gGACCUcGCcguaGGCGCCAucGGCUCgCAGGGc -3' miRNA: 3'- ugCUGGA-UG----UUGCGGU--UCGAG-GUCCU- -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 32289 | 0.69 | 0.417126 |
Target: 5'- gGCGGCCU-CG--GCCAAcuGCUCCAGGu -3' miRNA: 3'- -UGCUGGAuGUugCGGUU--CGAGGUCCu -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 753 | 0.7 | 0.407416 |
Target: 5'- cCGACCUGCuuCGCCAAuGCUCgCcGGc -3' miRNA: 3'- uGCUGGAUGuuGCGGUU-CGAG-GuCCu -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 7736 | 0.71 | 0.361053 |
Target: 5'- -aGACCUGaagaAGCGCCuGGCgguccUCCAGGGc -3' miRNA: 3'- ugCUGGAUg---UUGCGGuUCG-----AGGUCCU- -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 27599 | 0.71 | 0.352233 |
Target: 5'- -aGGCCUACAGCGaCGcGCUCCAGc- -3' miRNA: 3'- ugCUGGAUGUUGCgGUuCGAGGUCcu -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 35703 | 0.71 | 0.352233 |
Target: 5'- cUGGCCgaggACAugGCgGAugguccGCUCCAGGAc -3' miRNA: 3'- uGCUGGa---UGUugCGgUU------CGAGGUCCU- -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 17170 | 0.71 | 0.335053 |
Target: 5'- gUGGCCaagGCGucACGCCuggauguGCUCCAGGAc -3' miRNA: 3'- uGCUGGa--UGU--UGCGGuu-----CGAGGUCCU- -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 13449 | 0.71 | 0.318494 |
Target: 5'- cACGACCuUGCcauagaggguaAGCGCCAGGUugUCCGGGc -3' miRNA: 3'- -UGCUGG-AUG-----------UUGCGGUUCG--AGGUCCu -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 20904 | 0.71 | 0.318494 |
Target: 5'- cCGACC-GCAACaCCccGCUCCAGGAc -3' miRNA: 3'- uGCUGGaUGUUGcGGuuCGAGGUCCU- -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 16735 | 0.72 | 0.310448 |
Target: 5'- uUGAUCUGCAugGCCGAGCaaaccgCgAGGGc -3' miRNA: 3'- uGCUGGAUGUugCGGUUCGa-----GgUCCU- -5' |
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23147 | 5' | -54.6 | NC_005178.1 | + | 2565 | 0.72 | 0.302558 |
Target: 5'- --uGCCUACAAagcugGCCGGGCUuCCAGGGc -3' miRNA: 3'- ugcUGGAUGUUg----CGGUUCGA-GGUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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