miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23148 5' -57.5 NC_005178.1 + 19433 0.66 0.433279
Target:  5'- -cUGCCAcgcUCCcacAGCAccauGGCGGGCuGGg -3'
miRNA:   3'- caACGGU---AGG---UCGUu---CCGCCCGuCUa -5'
23148 5' -57.5 NC_005178.1 + 35030 0.66 0.433279
Target:  5'- --cGCC-UCCAGUAGucucauGGCGGGCGa-- -3'
miRNA:   3'- caaCGGuAGGUCGUU------CCGCCCGUcua -5'
23148 5' -57.5 NC_005178.1 + 36112 0.66 0.413514
Target:  5'- -aUGCCGcCCAGguuGGGCuGGCGGGUg -3'
miRNA:   3'- caACGGUaGGUCgu-UCCGcCCGUCUA- -5'
23148 5' -57.5 NC_005178.1 + 9298 0.66 0.394315
Target:  5'- aUUGgCGgcggCCAGCGAGGCGGcaGCGGc- -3'
miRNA:   3'- cAACgGUa---GGUCGUUCCGCC--CGUCua -5'
23148 5' -57.5 NC_005178.1 + 33507 0.66 0.384935
Target:  5'- -cUGCCA-CCGGCAGGcGCGGG-AGu- -3'
miRNA:   3'- caACGGUaGGUCGUUC-CGCCCgUCua -5'
23148 5' -57.5 NC_005178.1 + 24521 0.67 0.348918
Target:  5'- --gGCCAggcuggCCAGCAGcugcaccuucacGGCGGGCuuGAUg -3'
miRNA:   3'- caaCGGUa-----GGUCGUU------------CCGCCCGu-CUA- -5'
23148 5' -57.5 NC_005178.1 + 26156 0.67 0.340297
Target:  5'- --gGCCGcaccgaUCAGCcaccAGGCGGGCAGAc -3'
miRNA:   3'- caaCGGUa-----GGUCGu---UCCGCCCGUCUa -5'
23148 5' -57.5 NC_005178.1 + 28436 0.68 0.331832
Target:  5'- -aUGCCugcuuuUCCAGCu-GGCGGauGCGGGUg -3'
miRNA:   3'- caACGGu-----AGGUCGuuCCGCC--CGUCUA- -5'
23148 5' -57.5 NC_005178.1 + 5662 0.68 0.329323
Target:  5'- --aGCCAUcCCAGCAgggauacaccaccgAGGCGgucuGGCGGAc -3'
miRNA:   3'- caaCGGUA-GGUCGU--------------UCCGC----CCGUCUa -5'
23148 5' -57.5 NC_005178.1 + 9356 0.68 0.3227
Target:  5'- -gUGCCG-CCAGCAgucgccaGGGCGccggccgaGGCGGAUa -3'
miRNA:   3'- caACGGUaGGUCGU-------UCCGC--------CCGUCUA- -5'
23148 5' -57.5 NC_005178.1 + 16359 0.69 0.269716
Target:  5'- --aGCCAgaCCAGCGAGuCGGGCGGc- -3'
miRNA:   3'- caaCGGUa-GGUCGUUCcGCCCGUCua -5'
23148 5' -57.5 NC_005178.1 + 18622 0.73 0.142389
Target:  5'- --aGCUAUCCAGCAguuGGGCGGuCAGGc -3'
miRNA:   3'- caaCGGUAGGUCGU---UCCGCCcGUCUa -5'
23148 5' -57.5 NC_005178.1 + 33390 0.75 0.097403
Target:  5'- uGUUGCCGUUCAGCucuGCGGuGCAGAg -3'
miRNA:   3'- -CAACGGUAGGUCGuucCGCC-CGUCUa -5'
23148 5' -57.5 NC_005178.1 + 25955 1.05 0.000532
Target:  5'- gGUUGCCAUCCAGCAAGGCGGGCAGAUc -3'
miRNA:   3'- -CAACGGUAGGUCGUUCCGCCCGUCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.