miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23150 3' -57.5 NC_005178.1 + 33792 0.7 0.266609
Target:  5'- --uGCCGCCCUUGGcgauggcccggcgcgUCAGCuugAAGGUGGc -3'
miRNA:   3'- uauCGGCGGGAGCU---------------AGUCG---UUCCGCU- -5'
23150 3' -57.5 NC_005178.1 + 33355 0.7 0.250237
Target:  5'- --cGCCGUCUUCGGUCAGUgcuGGuCGAa -3'
miRNA:   3'- uauCGGCGGGAGCUAGUCGuu-CC-GCU- -5'
23150 3' -57.5 NC_005178.1 + 34061 0.7 0.230949
Target:  5'- --cGCCGCCCUUGAugcaggcgUCAcGUAGGGCa- -3'
miRNA:   3'- uauCGGCGGGAGCU--------AGU-CGUUCCGcu -5'
23150 3' -57.5 NC_005178.1 + 26155 0.7 0.230949
Target:  5'- -gGGCCGCaC-CGAUCAGCcaccAGGCGGg -3'
miRNA:   3'- uaUCGGCGgGaGCUAGUCGu---UCCGCU- -5'
23150 3' -57.5 NC_005178.1 + 27878 0.7 0.230949
Target:  5'- -aGGCCGCCCagggcaacUgGGUCAaCGGGGCGAc -3'
miRNA:   3'- uaUCGGCGGG--------AgCUAGUcGUUCCGCU- -5'
23150 3' -57.5 NC_005178.1 + 27691 0.71 0.207197
Target:  5'- --cGCCGCUugUUCGAUCAGCGuGGCa- -3'
miRNA:   3'- uauCGGCGG--GAGCUAGUCGUuCCGcu -5'
23150 3' -57.5 NC_005178.1 + 31499 0.71 0.207197
Target:  5'- -cGGCCGgCCUCGAcuUCcGCGAcGGCGGu -3'
miRNA:   3'- uaUCGGCgGGAGCU--AGuCGUU-CCGCU- -5'
23150 3' -57.5 NC_005178.1 + 15295 0.71 0.201598
Target:  5'- -gGGCCaGCCUggCGGUCGGCuuGGCGGu -3'
miRNA:   3'- uaUCGG-CGGGa-GCUAGUCGuuCCGCU- -5'
23150 3' -57.5 NC_005178.1 + 19781 0.73 0.156902
Target:  5'- -gGGCUGCCgUCGAaccCGGCAucgGGGCGAa -3'
miRNA:   3'- uaUCGGCGGgAGCUa--GUCGU---UCCGCU- -5'
23150 3' -57.5 NC_005178.1 + 32010 0.74 0.132287
Target:  5'- cGUAGCCGCCCagGcgCAGgcAGGCGAc -3'
miRNA:   3'- -UAUCGGCGGGagCuaGUCguUCCGCU- -5'
23150 3' -57.5 NC_005178.1 + 17440 0.75 0.104995
Target:  5'- --cGCCGUCUUCGAUCAGCuucgcggcgcGGGCGGu -3'
miRNA:   3'- uauCGGCGGGAGCUAGUCGu---------UCCGCU- -5'
23150 3' -57.5 NC_005178.1 + 26573 1.07 0.000436
Target:  5'- gAUAGCCGCCCUCGAUCAGCAAGGCGAu -3'
miRNA:   3'- -UAUCGGCGGGAGCUAGUCGUUCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.