Results 61 - 80 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23150 | 5' | -61 | NC_005178.1 | + | 13887 | 0.7 | 0.15847 |
Target: 5'- cGCCGCCCGGCgugaacgGGCCAgcgcGGAcuaugaguauuuCGCCc -3' miRNA: 3'- cCGGCGGGUUGa------CCGGUa---CCU------------GCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 23439 | 0.7 | 0.167321 |
Target: 5'- cGCCgacGCCCAggGCgacGGCCA-GGGCGCCc -3' miRNA: 3'- cCGG---CGGGU--UGa--CCGGUaCCUGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 25919 | 0.7 | 0.167321 |
Target: 5'- uGGUCa-CCAGcCUGGCCAgcgGGAUGCCa -3' miRNA: 3'- -CCGGcgGGUU-GACCGGUa--CCUGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 20805 | 0.7 | 0.167321 |
Target: 5'- aGGCCGCCCucgcgguuuGCUcGGCCAUGcaGAUcaaGCCg -3' miRNA: 3'- -CCGGCGGGu--------UGA-CCGGUAC--CUG---CGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 16703 | 0.7 | 0.167321 |
Target: 5'- aGGCauCGCCCAACUGaGCC---GGCGCCc -3' miRNA: 3'- -CCG--GCGGGUUGAC-CGGuacCUGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 34639 | 0.7 | 0.167321 |
Target: 5'- uGCgGCUCGAcCUGGCCGaGGcGCGCCa -3' miRNA: 3'- cCGgCGGGUU-GACCGGUaCC-UGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 25409 | 0.7 | 0.154205 |
Target: 5'- aGGCgGCCCGGaucaaGGCgAUGGuCGCCg -3' miRNA: 3'- -CCGgCGGGUUga---CCGgUACCuGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 32201 | 0.7 | 0.171911 |
Target: 5'- cGCCGacaCCGAgcguUUGGCCAUcGACGCCg -3' miRNA: 3'- cCGGCg--GGUU----GACCGGUAcCUGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 28253 | 0.7 | 0.181428 |
Target: 5'- uGCCGCCUcGCUGGCCGc---CGCCa -3' miRNA: 3'- cCGGCGGGuUGACCGGUaccuGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 20503 | 0.7 | 0.181428 |
Target: 5'- cGCCGCCCccgguaaccccGACccGGCgaaGUGGGCGCCc -3' miRNA: 3'- cCGGCGGG-----------UUGa-CCGg--UACCUGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 12657 | 0.7 | 0.162841 |
Target: 5'- cGGCgGCCgGcgcGCUGGCg--GGugGCCUg -3' miRNA: 3'- -CCGgCGGgU---UGACCGguaCCugCGGA- -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 17339 | 0.71 | 0.142028 |
Target: 5'- aGGUCGCCCAGCUcGGCagcccGCGCCg -3' miRNA: 3'- -CCGGCGGGUUGA-CCGguaccUGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 34984 | 0.71 | 0.145986 |
Target: 5'- uGGCCGC---GCUGGCCGaGG-CGCCg -3' miRNA: 3'- -CCGGCGgguUGACCGGUaCCuGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 32441 | 0.71 | 0.150044 |
Target: 5'- gGGCCGgaaCCCAGCUcagcacgcGGCCAUGGAaGCg- -3' miRNA: 3'- -CCGGC---GGGUUGA--------CCGGUACCUgCGga -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 26397 | 0.71 | 0.134405 |
Target: 5'- aGGaaGCCCAggGCggcGGCCA-GGGCGCCc -3' miRNA: 3'- -CCggCGGGU--UGa--CCGGUaCCUGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 10726 | 0.71 | 0.144391 |
Target: 5'- gGGCCgaagacaGCCCcGCUGGCCAcagcgcgucccggcUGGAagGCCUg -3' miRNA: 3'- -CCGG-------CGGGuUGACCGGU--------------ACCUg-CGGA- -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 25181 | 0.72 | 0.12716 |
Target: 5'- aGGCCGCCgGuAgUGGCC-UGGGCGgCa -3' miRNA: 3'- -CCGGCGGgU-UgACCGGuACCUGCgGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 22549 | 0.72 | 0.116969 |
Target: 5'- gGGaCCGCCC--CUGGCCAcGGAUgGCCa -3' miRNA: 3'- -CC-GGCGGGuuGACCGGUaCCUG-CGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 9486 | 0.73 | 0.104563 |
Target: 5'- gGGUCGCCaucCUGGCCA-GGuCGCCa -3' miRNA: 3'- -CCGGCGGguuGACCGGUaCCuGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 28788 | 0.73 | 0.096082 |
Target: 5'- cGCCGCCCGcacGCUGGCCAaGu-CGCCc -3' miRNA: 3'- cCGGCGGGU---UGACCGGUaCcuGCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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