Results 81 - 89 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23150 | 5' | -61 | NC_005178.1 | + | 27455 | 0.66 | 0.31963 |
Target: 5'- cGGCgGCCCAGCgcaucaGCC-UGGAccagaagauCGCCg -3' miRNA: 3'- -CCGgCGGGUUGac----CGGuACCU---------GCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 2974 | 0.66 | 0.318852 |
Target: 5'- cGGCCGCCCGagcgcggaugGCUGccgagcgugcgcaGCC-UGGAgCGCUUc -3' miRNA: 3'- -CCGGCGGGU----------UGAC-------------CGGuACCU-GCGGA- -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 17144 | 0.66 | 0.314981 |
Target: 5'- cGGCCaCCCAugcccgagcgcugacGgUGGCCAaGGcgucACGCCUg -3' miRNA: 3'- -CCGGcGGGU---------------UgACCGGUaCC----UGCGGA- -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 4082 | 0.66 | 0.314981 |
Target: 5'- cGGCga-CCAGgUGGCCGUGGgcuacgacauccacgACGCCa -3' miRNA: 3'- -CCGgcgGGUUgACCGGUACC---------------UGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 30540 | 0.66 | 0.311909 |
Target: 5'- gGGCUGUgCAACaUGGCCuuccucGCGCCUg -3' miRNA: 3'- -CCGGCGgGUUG-ACCGGuacc--UGCGGA- -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 2760 | 0.66 | 0.311909 |
Target: 5'- cGGuCCGCCaggagacgCAGCUGGCCcUGGucgaaaccaacCGCCa -3' miRNA: 3'- -CC-GGCGG--------GUUGACCGGuACCu----------GCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 35379 | 0.66 | 0.302084 |
Target: 5'- cGGCUGCugacgaacaCCAGCgagGGCCAacuggccccggcgcUGGcCGCCa -3' miRNA: 3'- -CCGGCG---------GGUUGa--CCGGU--------------ACCuGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 4649 | 0.66 | 0.296894 |
Target: 5'- -aCCaCCCAACUGGCCaAUGGcAUgGCCg -3' miRNA: 3'- ccGGcGGGUUGACCGG-UACC-UG-CGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 1035 | 0.66 | 0.3355 |
Target: 5'- cGGCCGuCCCAuc--GCCAcuagcaaaucuUGGACGCgCUg -3' miRNA: 3'- -CCGGC-GGGUugacCGGU-----------ACCUGCG-GA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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