Results 81 - 89 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23150 | 5' | -61 | NC_005178.1 | + | 28788 | 0.73 | 0.096082 |
Target: 5'- cGCCGCCCGcacGCUGGCCAaGu-CGCCc -3' miRNA: 3'- cCGGCGGGU---UGACCGGUaCcuGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 15778 | 0.74 | 0.090794 |
Target: 5'- cGCCGCCUGGCUGGCguUGGAaagcggagcggUGCCc -3' miRNA: 3'- cCGGCGGGUUGACCGguACCU-----------GCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 20381 | 0.74 | 0.090794 |
Target: 5'- -aCCGCCCugaAGCcGGCCcUGGACGCCc -3' miRNA: 3'- ccGGCGGG---UUGaCCGGuACCUGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 7300 | 0.74 | 0.083377 |
Target: 5'- cGCCGCCCGGCUGcuccaGCgCAUGGGggucCGCCUu -3' miRNA: 3'- cCGGCGGGUUGAC-----CG-GUACCU----GCGGA- -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 9832 | 0.75 | 0.066324 |
Target: 5'- cGCCaagGCCCAGCUGGgCAUGGACGaugacaCCUa -3' miRNA: 3'- cCGG---CGGGUUGACCgGUACCUGC------GGA- -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 26707 | 0.76 | 0.062617 |
Target: 5'- cGuuGCCgGGgUGGCCAaGGGCGCCUg -3' miRNA: 3'- cCggCGGgUUgACCGGUaCCUGCGGA- -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 12202 | 0.77 | 0.048275 |
Target: 5'- cGGCCaGCCUGGCUGG-CAUGGuCGCCa -3' miRNA: 3'- -CCGG-CGGGUUGACCgGUACCuGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 14736 | 0.86 | 0.009314 |
Target: 5'- cGGUCGCUCAGCUGGCgGaUGGACGCCUc -3' miRNA: 3'- -CCGGCGGGUUGACCGgU-ACCUGCGGA- -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 26607 | 1.09 | 0.00015 |
Target: 5'- gGGCCGCCCAACUGGCCAUGGACGCCUa -3' miRNA: 3'- -CCGGCGGGUUGACCGGUACCUGCGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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